Wall clock time and date at job start Mon Mar 30 2020 01:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.00853 * 2 1 4 4 C 1.54281 * 109.98826 * 238.70544 * 2 1 3 5 5 C 1.54986 * 103.88177 * 263.85169 * 4 2 1 6 6 H 1.08994 * 110.83357 * 81.04714 * 5 4 2 7 7 C 1.50703 * 110.83000 * 204.62817 * 5 4 2 8 8 H 1.07996 * 120.00192 * 359.97438 * 7 5 4 9 9 C 1.37876 * 119.99605 * 179.97438 * 7 5 4 10 10 N 1.31505 * 120.00589 * 0.02562 * 9 7 5 11 11 Si 1.86806 * 119.99563 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47247 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47164 * 120.00418 * 11 9 7 14 14 H 1.48501 * 109.47036 * 240.00024 * 11 9 7 15 15 C 1.54888 * 102.33236 * 322.83694 * 5 4 2 16 16 C 1.51839 * 110.04800 * 121.48503 * 2 1 3 17 17 O 1.20754 * 126.29974 * 299.60671 * 16 2 1 18 18 H 1.09000 * 109.46769 * 181.29245 * 1 2 3 19 19 H 1.09005 * 109.47064 * 301.29379 * 1 2 3 20 20 H 1.08996 * 109.46957 * 61.29419 * 1 2 3 21 21 H 1.09002 * 110.57272 * 145.20729 * 4 2 1 22 22 H 1.09003 * 110.56663 * 22.48589 * 4 2 1 23 23 H 0.96995 * 120.00680 * 179.97438 * 10 9 7 24 24 H 1.08997 * 110.44306 * 156.36848 * 15 5 4 25 25 H 1.09005 * 110.44057 * 278.76470 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0573 -0.7531 -1.2389 5 6 2.3359 -2.1843 -0.7134 6 1 1.4165 -2.7685 -0.6738 7 6 3.3746 -2.8735 -1.5603 8 1 3.8119 -2.3592 -2.4033 9 6 3.7666 -4.1605 -1.2589 10 7 3.2337 -4.7869 -0.2327 11 14 5.0547 -5.0145 -2.3083 12 1 5.4932 -4.1014 -3.3942 13 1 6.2212 -5.3760 -1.4634 14 1 4.4730 -6.2452 -2.9018 15 6 2.8783 -1.9136 0.7119 16 6 2.0505 -0.7450 1.2164 17 8 1.8439 -0.4602 2.3715 18 1 -0.3633 -1.0274 0.0232 19 1 -0.3633 0.5338 0.8782 20 1 -0.3633 0.4936 -0.9013 21 1 2.9758 -0.2937 -1.6042 22 1 1.3020 -0.7739 -2.0246 23 1 3.5092 -5.6925 -0.0208 24 1 2.7312 -2.7868 1.3474 25 1 3.9343 -1.6459 0.6728 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261137171.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:21 Heat of formation + Delta-G solvation = -79.542038 kcal Electronic energy + Delta-G solvation = -9626.236766 eV Core-core repulsion = 7796.106223 eV Total energy + Delta-G solvation = -1830.130543 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.70464 -37.47192 -34.63363 -31.82761 -28.47395 -26.95550 -24.72355 -21.31151 -19.83374 -18.56279 -16.88230 -16.38522 -16.09964 -15.60684 -14.65710 -14.18883 -14.04211 -13.75720 -13.17929 -12.89282 -12.76715 -12.45721 -12.24609 -11.96148 -11.46226 -11.07058 -10.95027 -10.57196 -10.12091 -8.13188 -6.23979 1.01795 1.43340 1.46170 1.56875 2.44724 3.18245 3.37089 3.86431 4.16601 4.23270 4.61543 4.69790 4.78431 4.86032 5.02982 5.13989 5.19379 5.23830 5.34735 5.58443 5.78546 5.91668 6.32199 6.60629 6.89024 7.45674 8.96226 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.077442 B = 0.014091 C = 0.012924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 361.476109 B = 1986.624161 C = 2166.058092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.144 4.144 3 H 0.116 0.884 4 C -0.101 4.101 5 C 0.046 3.954 6 H 0.011 0.989 7 C -0.526 4.526 8 H 0.066 0.934 9 C 0.010 3.990 10 N -0.924 5.924 11 Si 0.955 3.045 12 H -0.261 1.261 13 H -0.285 1.285 14 H -0.283 1.283 15 C -0.161 4.161 16 C 0.370 3.630 17 O -0.499 6.499 18 H 0.044 0.956 19 H 0.059 0.941 20 H 0.091 0.909 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.260 0.740 24 H 0.055 0.945 25 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 6.993 -2.909 7.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.163 4.163 3 H 0.134 0.866 4 C -0.138 4.138 5 C 0.027 3.973 6 H 0.029 0.971 7 C -0.564 4.564 8 H 0.084 0.916 9 C -0.189 4.189 10 N -0.563 5.563 11 Si 0.781 3.219 12 H -0.185 1.185 13 H -0.211 1.211 14 H -0.209 1.209 15 C -0.199 4.199 16 C 0.249 3.751 17 O -0.376 6.376 18 H 0.063 0.937 19 H 0.078 0.922 20 H 0.110 0.890 21 H 0.089 0.911 22 H 0.095 0.905 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.032 6.981 -2.232 7.605 hybrid contribution 0.759 -1.038 -0.152 1.295 sum -1.273 5.943 -2.384 6.529 Atomic orbital electron populations 1.21652 0.91795 1.01960 1.03382 1.22338 0.98573 1.01052 0.94294 0.86592 1.22411 1.00811 0.95158 0.95455 1.19479 0.94980 0.92601 0.90211 0.97061 1.21527 1.22593 0.99021 1.13291 0.91607 1.25833 0.98464 0.98346 0.96269 1.70084 1.44244 1.12994 1.28979 0.85538 0.78856 0.78474 0.78994 1.18477 1.21087 1.20942 1.22886 0.99825 0.95913 1.01326 1.25912 0.75546 0.84605 0.89008 1.90267 1.54571 1.69315 1.23465 0.93710 0.92206 0.89047 0.91056 0.90480 0.93068 0.92608 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.08 71.98 0.65 -3.04 15 2 C -0.14 -4.68 3.45 -10.74 -0.04 -4.72 15 3 H 0.12 3.17 8.14 -2.39 -0.02 3.15 15 4 C -0.10 -3.63 5.82 31.71 0.18 -3.44 15 5 C 0.05 2.18 2.75 -10.21 -0.03 2.15 15 6 H 0.01 0.59 8.14 -2.39 -0.02 0.57 15 7 C -0.53 -27.39 8.49 25.60 0.22 -27.18 15 8 H 0.07 3.28 7.77 -2.91 -0.02 3.26 15 9 C 0.01 0.52 5.37 84.66 0.45 0.98 15 10 N -0.92 -53.10 12.46 21.45 0.27 -52.83 15 11 Si 0.96 42.31 29.54 68.60 2.03 44.34 15 12 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 15 C -0.16 -7.57 5.67 30.86 0.17 -7.39 15 16 C 0.37 15.25 7.20 29.83 0.21 15.46 15 17 O -0.50 -22.57 17.99 -1.43 -0.03 -22.60 15 18 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 19 H 0.06 1.61 8.14 -2.38 -0.02 1.59 15 20 H 0.09 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.07 2.45 8.03 -2.39 -0.02 2.43 15 22 H 0.08 2.50 7.84 -2.39 -0.02 2.48 15 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 15 24 H 0.06 2.96 7.67 -2.39 -0.02 2.95 15 25 H 0.08 3.95 8.03 -2.38 -0.02 3.93 15 Total: -1.00 -60.10 217.49 5.26 -54.85 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.16 Total: 3.43 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 1.83 Total: -27.18 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.27 Total: -52.83 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.03 Total: -22.60 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -60.10 5.26 -54.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261137171.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.696 kcal (2) G-P(sol) polarization free energy of solvation -60.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds