Wall clock time and date at job start Mon Mar 30 2020 02:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47192 * 2 1 4 4 C 1.53001 * 109.47408 * 239.99836 * 2 1 3 5 5 C 1.52999 * 109.47419 * 120.00191 * 2 1 3 6 6 H 1.08998 * 115.54817 * 274.33195 * 5 2 1 7 7 C 1.53069 * 117.51660 * 128.60633 * 5 2 1 8 8 C 1.53000 * 59.98584 * 252.52266 * 7 5 2 9 9 H 1.09002 * 117.49833 * 107.50105 * 8 7 5 10 10 C 1.50697 * 117.50034 * 252.49893 * 8 7 5 11 11 H 1.08004 * 120.00282 * 68.74871 * 10 8 7 12 12 C 1.37879 * 120.00229 * 248.74545 * 10 8 7 13 13 N 1.31519 * 119.99844 * 0.02562 * 12 10 8 14 14 Si 1.86793 * 120.00350 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46890 * 90.00194 * 14 12 10 16 16 H 1.48495 * 109.47406 * 210.00074 * 14 12 10 17 17 H 1.48504 * 109.47490 * 330.00278 * 14 12 10 18 18 H 1.08999 * 109.47538 * 300.00053 * 1 2 3 19 19 H 1.09006 * 109.47589 * 60.00192 * 1 2 3 20 20 H 1.09005 * 109.47124 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47279 * 179.97438 * 3 2 1 22 22 H 1.08995 * 109.46948 * 299.99898 * 3 2 1 23 23 H 1.09005 * 109.47132 * 59.99966 * 3 2 1 24 24 H 1.09005 * 109.47218 * 300.00237 * 4 2 1 25 25 H 1.09012 * 109.46903 * 59.99861 * 4 2 1 26 26 H 1.08995 * 109.47802 * 179.97438 * 4 2 1 27 27 H 1.09008 * 117.49334 * 145.03821 * 7 5 2 28 28 H 1.08999 * 117.51639 * 0.02562 * 7 5 2 29 29 H 0.96992 * 120.00167 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 2.1267 -0.1061 2.1448 7 6 3.0744 -1.8322 1.0516 8 6 1.6357 -2.1853 1.4343 9 1 1.0064 -2.6346 0.6660 10 6 1.3878 -2.6662 2.8408 11 1 1.4962 -1.9847 3.6716 12 6 1.0227 -3.9764 3.0671 13 7 0.8912 -4.8065 2.0555 14 14 0.7162 -4.5728 4.8105 15 1 -0.7142 -4.3748 5.1570 16 1 1.0536 -6.0157 4.9066 17 1 1.5654 -3.8019 5.7540 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 3.1299 1.4425 0.0005 22 1 1.6766 1.9563 -0.8900 23 1 1.6766 1.9564 0.8900 24 1 1.6766 -1.7490 -1.2492 25 1 1.6766 -0.2074 -2.1393 26 1 3.1300 -0.7209 -1.2495 27 1 3.8416 -1.9474 1.8173 28 1 3.3919 -2.0490 0.0316 29 1 0.6348 -5.7282 2.2147 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261139083.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:34 Heat of formation + Delta-G solvation = -2.872007 kcal Electronic energy + Delta-G solvation = -9825.441339 eV Core-core repulsion = 8134.468553 eV Total energy + Delta-G solvation = -1690.972786 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.01449 -33.57016 -31.64999 -26.84131 -26.71128 -25.37629 -21.80648 -20.11458 -17.44211 -16.47066 -14.76225 -14.49811 -13.64748 -13.38821 -12.77690 -11.91502 -11.81203 -11.71601 -11.22318 -11.10948 -10.95554 -10.75189 -10.46694 -10.29278 -10.13002 -9.72551 -9.29173 -8.92654 -8.34727 -8.08715 -6.03868 -4.01959 3.30445 3.36981 3.40669 4.42221 5.06574 5.39910 5.46509 5.51600 5.82770 6.06213 6.13756 6.18272 6.28373 6.36685 6.42945 6.55376 6.60812 6.69568 6.81095 6.85416 7.03532 7.10005 7.12051 7.47711 7.72641 7.95254 8.51432 8.99448 9.57224 11.06884 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.075020 B = 0.012430 C = 0.012213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.143098 B = 2252.091182 C = 2292.151911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.034 4.034 3 C -0.134 4.134 4 C -0.139 4.139 5 C -0.181 4.181 6 H 0.081 0.919 7 C -0.214 4.214 8 C 0.040 3.960 9 H 0.076 0.924 10 C -0.493 4.493 11 H 0.056 0.944 12 C 0.065 3.935 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 H 0.050 0.950 19 H 0.039 0.961 20 H 0.061 0.939 21 H 0.049 0.951 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 7.062 -3.530 7.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.034 4.034 3 C -0.191 4.191 4 C -0.196 4.196 5 C -0.199 4.199 6 H 0.099 0.901 7 C -0.252 4.252 8 C 0.022 3.978 9 H 0.094 0.906 10 C -0.531 4.531 11 H 0.075 0.925 12 C -0.137 4.137 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 H 0.069 0.931 19 H 0.058 0.942 20 H 0.080 0.920 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.546 6.861 -3.571 7.755 hybrid contribution -0.029 -0.373 0.946 1.018 sum 0.516 6.489 -2.625 7.019 Atomic orbital electron populations 1.21791 0.95170 1.02155 0.99977 1.19962 0.94898 0.94026 0.94559 1.21828 1.00566 0.96244 1.00472 1.21946 1.00641 1.00729 0.96260 1.22345 1.07804 0.93248 0.96518 0.90110 1.23198 0.96451 1.05906 0.99639 1.19896 0.91545 0.88966 0.97396 0.90640 1.20728 1.45854 0.95156 0.91360 0.92546 1.25027 0.94825 0.96817 0.97066 1.69965 1.47177 1.05063 1.30360 0.86565 0.78595 0.77949 0.84734 1.20527 1.21136 1.19820 0.93129 0.94201 0.92037 0.93171 0.93740 0.93213 0.92183 0.94062 0.92845 0.91220 0.91152 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.31 37.15 0.31 -2.05 15 2 C -0.03 -0.62 0.88 -154.51 -0.14 -0.76 15 3 C -0.13 -2.06 8.46 37.16 0.31 -1.75 15 4 C -0.14 -2.38 7.07 37.16 0.26 -2.12 15 5 C -0.18 -3.95 4.85 -90.58 -0.44 -4.39 15 6 H 0.08 1.80 8.11 -51.93 -0.42 1.38 15 7 C -0.21 -4.98 9.27 -26.70 -0.25 -5.23 15 8 C 0.04 1.05 4.43 -91.77 -0.41 0.64 15 9 H 0.08 2.10 6.83 -51.93 -0.35 1.75 15 10 C -0.49 -14.06 9.20 -34.44 -0.32 -14.38 15 11 H 0.06 1.59 7.81 -52.48 -0.41 1.18 15 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 13 N -0.89 -26.33 13.13 55.43 0.73 -25.60 15 14 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 15 15 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 18 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 19 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.06 1.20 7.29 -51.93 -0.38 0.82 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.06 1.13 7.07 -51.93 -0.37 0.76 15 25 H 0.04 0.61 8.14 -51.92 -0.42 0.19 15 26 H 0.05 0.89 6.98 -51.93 -0.36 0.53 15 27 H 0.07 1.65 8.14 -51.92 -0.42 1.23 15 28 H 0.07 1.53 5.85 -51.93 -0.30 1.22 15 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 LS Contribution 237.17 15.07 3.57 3.57 Total: -1.00 -28.83 237.17 -6.17 -35.00 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.69 Total: -1.26 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -0.76 Total: -28.27 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.73 Total: -25.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.83 -6.17 -35.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139083.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.127 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds