Wall clock time and date at job start Mon Mar 30 2020 02:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47192 * 2 1 4 4 C 1.53001 * 109.47408 * 239.99836 * 2 1 3 5 5 C 1.52999 * 109.47419 * 120.00191 * 2 1 3 6 6 H 1.08998 * 115.54817 * 274.33195 * 5 2 1 7 7 C 1.53069 * 117.51660 * 128.60633 * 5 2 1 8 8 C 1.53000 * 59.98584 * 252.52266 * 7 5 2 9 9 H 1.09002 * 117.49833 * 107.50105 * 8 7 5 10 10 C 1.50697 * 117.50034 * 252.49893 * 8 7 5 11 11 H 1.08004 * 120.00282 * 68.74871 * 10 8 7 12 12 C 1.37879 * 120.00229 * 248.74545 * 10 8 7 13 13 N 1.31519 * 119.99844 * 0.02562 * 12 10 8 14 14 Si 1.86793 * 120.00350 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46890 * 90.00194 * 14 12 10 16 16 H 1.48495 * 109.47406 * 210.00074 * 14 12 10 17 17 H 1.48504 * 109.47490 * 330.00278 * 14 12 10 18 18 H 1.08999 * 109.47538 * 300.00053 * 1 2 3 19 19 H 1.09006 * 109.47589 * 60.00192 * 1 2 3 20 20 H 1.09005 * 109.47124 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47279 * 179.97438 * 3 2 1 22 22 H 1.08995 * 109.46948 * 299.99898 * 3 2 1 23 23 H 1.09005 * 109.47132 * 59.99966 * 3 2 1 24 24 H 1.09005 * 109.47218 * 300.00237 * 4 2 1 25 25 H 1.09012 * 109.46903 * 59.99861 * 4 2 1 26 26 H 1.08995 * 109.47802 * 179.97438 * 4 2 1 27 27 H 1.09008 * 117.49334 * 145.03821 * 7 5 2 28 28 H 1.08999 * 117.51639 * 0.02562 * 7 5 2 29 29 H 0.96992 * 120.00167 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 2.1267 -0.1061 2.1448 7 6 3.0744 -1.8322 1.0516 8 6 1.6357 -2.1853 1.4343 9 1 1.0064 -2.6346 0.6660 10 6 1.3878 -2.6662 2.8408 11 1 1.4962 -1.9847 3.6716 12 6 1.0227 -3.9764 3.0671 13 7 0.8912 -4.8065 2.0555 14 14 0.7162 -4.5728 4.8105 15 1 -0.7142 -4.3748 5.1570 16 1 1.0536 -6.0157 4.9066 17 1 1.5654 -3.8019 5.7540 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 3.1299 1.4425 0.0005 22 1 1.6766 1.9563 -0.8900 23 1 1.6766 1.9564 0.8900 24 1 1.6766 -1.7490 -1.2492 25 1 1.6766 -0.2074 -2.1393 26 1 3.1300 -0.7209 -1.2495 27 1 3.8416 -1.9474 1.8173 28 1 3.3919 -2.0490 0.0316 29 1 0.6348 -5.7282 2.2147 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139083.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:34 Heat of formation + Delta-G solvation = -18.649382 kcal Electronic energy + Delta-G solvation = -9826.125498 eV Core-core repulsion = 8134.468553 eV Total energy + Delta-G solvation = -1691.656945 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.68690 -35.40737 -33.64498 -28.32197 -28.01606 -27.44065 -23.48136 -22.13603 -19.07490 -18.54020 -16.60471 -16.34515 -15.25880 -14.82014 -14.43090 -13.63489 -13.50552 -13.13922 -12.99346 -12.84203 -12.54160 -12.42945 -12.26416 -11.82987 -11.74404 -11.36878 -11.17514 -10.99105 -10.30618 -10.03234 -8.19776 -6.24913 1.39431 1.40146 1.51438 2.39592 3.00776 3.57485 3.97967 4.10268 4.32943 4.60309 4.62209 4.78038 4.83298 4.95624 4.98642 5.00225 5.06321 5.12585 5.19508 5.27550 5.36319 5.50464 5.60192 5.63019 5.73435 5.84700 6.38616 6.82368 7.37306 8.91636 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.075020 B = 0.012430 C = 0.012213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.143098 B = 2252.091182 C = 2292.151911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.038 4.038 3 C -0.128 4.128 4 C -0.136 4.136 5 C -0.152 4.152 6 H 0.077 0.923 7 C -0.208 4.208 8 C 0.005 3.995 9 H 0.048 0.952 10 C -0.516 4.516 11 H 0.052 0.948 12 C 0.011 3.989 13 N -0.925 5.925 14 Si 0.963 3.037 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.267 1.267 18 H 0.049 0.951 19 H 0.071 0.929 20 H 0.031 0.969 21 H 0.054 0.946 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 8.462 -3.591 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.038 4.038 3 C -0.185 4.185 4 C -0.193 4.193 5 C -0.171 4.171 6 H 0.095 0.905 7 C -0.246 4.246 8 C -0.014 4.014 9 H 0.066 0.934 10 C -0.553 4.553 11 H 0.070 0.930 12 C -0.188 4.188 13 N -0.563 5.563 14 Si 0.788 3.212 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.191 1.191 18 H 0.068 0.932 19 H 0.090 0.910 20 H 0.050 0.950 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.711 8.278 -3.633 9.068 hybrid contribution -0.075 -0.779 0.921 1.208 sum 0.636 7.499 -2.713 8.000 Atomic orbital electron populations 1.21760 0.94868 1.00683 1.01528 1.20064 0.95191 0.95685 0.92880 1.21766 1.00864 0.93897 1.01997 1.21903 1.00905 0.99403 0.97049 1.22422 1.04962 0.91438 0.98235 0.90520 1.23166 0.94933 1.06381 1.00120 1.19722 0.93143 0.92675 0.95812 0.93393 1.21071 1.46206 0.95639 0.92429 0.92969 1.25887 0.94610 0.96892 1.01393 1.70088 1.48250 1.05411 1.32589 0.85480 0.78790 0.77469 0.79486 1.19629 1.20533 1.19122 0.93190 0.91041 0.95019 0.92716 0.91095 0.92895 0.94865 0.91094 0.92374 0.92016 0.89662 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 8.31 71.98 0.60 -3.83 15 2 C -0.04 -1.31 0.88 -52.18 -0.05 -1.35 15 3 C -0.13 -3.48 8.46 71.98 0.61 -2.87 15 4 C -0.14 -4.39 7.07 71.98 0.51 -3.88 15 5 C -0.15 -6.57 4.85 -10.77 -0.05 -6.62 15 6 H 0.08 3.36 8.11 -2.39 -0.02 3.34 15 7 C -0.21 -9.71 9.27 30.62 0.28 -9.43 15 8 C 0.00 0.26 4.43 -11.54 -0.05 0.21 15 9 H 0.05 2.80 6.83 -2.39 -0.02 2.78 15 10 C -0.52 -30.00 9.20 25.60 0.24 -29.77 15 11 H 0.05 2.98 7.81 -2.91 -0.02 2.96 15 12 C 0.01 0.64 5.46 84.65 0.46 1.10 15 13 N -0.92 -56.12 13.13 21.45 0.28 -55.84 15 14 Si 0.96 44.66 29.54 68.60 2.03 46.69 15 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 15 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 18 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 19 H 0.07 1.95 8.14 -2.38 -0.02 1.93 15 20 H 0.03 1.23 7.29 -2.38 -0.02 1.21 15 21 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.05 1.40 8.14 -2.38 -0.02 1.38 15 24 H 0.03 1.23 7.07 -2.38 -0.02 1.22 15 25 H 0.07 1.87 8.14 -2.38 -0.02 1.85 15 26 H 0.06 1.81 6.98 -2.39 -0.02 1.79 15 27 H 0.06 2.93 8.14 -2.38 -0.02 2.92 15 28 H 0.09 3.67 5.85 -2.39 -0.01 3.66 15 29 H 0.26 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -62.20 237.17 5.95 -56.25 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.09 Total: 9.34 kcal Atomic # 6 Polarization: -58.99 SS G_CDS: 2.55 Total: -56.44 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.28 Total: -55.84 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -62.20 5.95 -56.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139083.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.603 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds