Wall clock time and date at job start Mon Mar 30 2020 02:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 110.53703 * 2 1 4 4 C 1.54262 * 110.48928 * 237.38516 * 2 1 3 5 5 C 1.54087 * 106.62433 * 217.59863 * 4 2 1 6 6 C 1.54272 * 106.49093 * 0.17321 * 5 4 2 7 7 H 1.08998 * 110.48495 * 264.70520 * 6 5 4 8 8 C 1.52999 * 110.48530 * 142.19605 * 6 5 4 9 9 C 1.50702 * 109.47525 * 68.23932 * 8 6 5 10 10 H 1.08002 * 119.99441 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00075 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00481 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99886 * 179.73007 * 11 9 8 14 14 H 1.48502 * 109.46964 * 270.27509 * 13 11 9 15 15 H 1.48505 * 109.47036 * 30.26897 * 13 11 9 16 16 H 1.48490 * 109.47395 * 150.27411 * 13 11 9 17 17 C 1.54891 * 110.48511 * 122.60834 * 2 1 3 18 18 H 1.09002 * 109.47756 * 297.38959 * 1 2 3 19 19 H 1.09001 * 109.47290 * 57.39300 * 1 2 3 20 20 H 1.09005 * 109.46944 * 177.38899 * 1 2 3 21 21 H 1.09001 * 110.03540 * 336.99537 * 4 2 1 22 22 H 1.08999 * 110.03553 * 98.37783 * 4 2 1 23 23 H 1.08995 * 110.16475 * 240.88157 * 5 4 2 24 24 H 1.09001 * 110.00376 * 119.38089 * 5 4 2 25 25 H 1.09009 * 109.47378 * 308.24212 * 8 6 5 26 26 H 1.08998 * 109.47458 * 188.24673 * 8 6 5 27 27 H 0.97005 * 119.99656 * 359.72741 * 12 11 9 28 28 H 1.08997 * 110.75849 * 38.31293 * 17 2 1 29 29 H 1.09005 * 110.75700 * 274.93495 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0699 -0.7789 -1.2172 5 6 3.3200 -1.5395 -0.7346 6 6 3.4907 -1.1978 0.7601 7 1 4.1902 -0.3713 0.8850 8 6 3.9692 -2.4249 1.5387 9 6 5.3790 -2.7627 1.1271 10 1 5.8834 -2.1619 0.3848 11 6 6.0249 -3.8386 1.6982 12 7 5.4108 -4.5699 2.6026 13 14 7.7697 -4.2618 1.1826 14 1 7.7320 -5.2033 0.0348 15 1 8.4821 -3.0218 0.7823 16 1 8.4820 -4.8966 2.3204 17 6 2.0720 -0.7819 1.2222 18 1 -0.3635 0.4728 0.9124 19 1 -0.3634 0.5538 -0.8657 20 1 -0.3633 -1.0267 -0.0468 21 1 1.3176 -1.4823 -1.5740 22 1 2.3404 -0.0859 -2.0139 23 1 4.1969 -1.2145 -1.2943 24 1 3.1743 -2.6127 -0.8580 25 1 3.3154 -3.2700 1.3227 26 1 3.9441 -2.2099 2.6070 27 1 4.5049 -4.3499 2.8706 28 1 1.4580 -1.6600 1.4223 29 1 2.1250 -0.1380 2.1002 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149630.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:52 Heat of formation + Delta-G solvation = -62.241354 kcal Electronic energy + Delta-G solvation = -9715.147739 eV Core-core repulsion = 8021.600505 eV Total energy + Delta-G solvation = -1693.547234 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.53143 -35.65095 -32.87607 -30.32557 -28.28323 -25.60523 -24.17022 -20.98592 -20.46094 -18.75477 -16.90904 -15.79270 -15.55443 -14.96087 -14.48349 -14.24780 -13.74176 -13.67337 -13.16083 -12.63798 -12.46643 -11.96329 -11.87655 -11.71575 -11.47878 -11.45030 -11.29705 -11.17744 -10.53875 -10.51262 -8.68363 -6.37703 1.50406 1.60234 1.77915 2.56265 3.16117 3.71654 3.82974 3.86571 4.38821 4.52277 4.56524 4.68548 4.74539 4.76599 4.86948 5.00057 5.04919 5.11691 5.14060 5.24174 5.35618 5.40947 5.45985 5.58720 5.69110 6.03828 6.19593 6.59475 7.44280 8.72094 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.094305 B = 0.010951 C = 0.010269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.836257 B = 2556.126384 C = 2725.913720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.080 0.920 4 C -0.113 4.113 5 C -0.107 4.107 6 C -0.080 4.080 7 H 0.053 0.947 8 C 0.018 3.982 9 C -0.609 4.609 10 H 0.049 0.951 11 C -0.043 4.043 12 N -0.941 5.941 13 Si 1.120 2.880 14 H -0.272 1.272 15 H -0.269 1.269 16 H -0.282 1.282 17 C -0.115 4.115 18 H 0.059 0.941 19 H 0.069 0.931 20 H 0.049 0.951 21 H 0.066 0.934 22 H 0.075 0.925 23 H 0.051 0.949 24 H 0.038 0.962 25 H -0.015 1.015 26 H -0.019 1.019 27 H 0.253 0.747 28 H 0.053 0.947 29 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 8.410 -6.596 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.098 0.902 4 C -0.151 4.151 5 C -0.144 4.144 6 C -0.099 4.099 7 H 0.071 0.929 8 C -0.019 4.019 9 C -0.647 4.647 10 H 0.067 0.933 11 C -0.240 4.240 12 N -0.579 5.579 13 Si 0.941 3.059 14 H -0.198 1.198 15 H -0.194 1.194 16 H -0.208 1.208 17 C -0.153 4.153 18 H 0.078 0.922 19 H 0.088 0.912 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.094 0.906 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.003 0.997 26 H -0.001 1.001 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.300 7.365 -6.350 11.075 hybrid contribution -1.199 0.704 0.147 1.398 sum -6.499 8.069 -6.203 12.075 Atomic orbital electron populations 1.21767 0.93568 1.01796 1.02371 1.21952 0.96465 0.98889 0.93720 0.90182 1.22263 0.96224 0.98748 0.97831 1.22040 0.98014 0.99134 0.95243 1.21843 0.95973 0.96632 0.95442 0.92873 1.19212 0.95411 0.93499 0.93778 1.22491 1.00686 1.15836 1.25647 0.93255 1.27476 1.09260 0.93434 0.93825 1.70892 1.14411 1.41076 1.31554 0.82904 0.70064 0.76653 0.76257 1.19765 1.19361 1.20780 1.22637 0.95249 0.99210 0.98171 0.92152 0.91172 0.93170 0.91507 0.90599 0.92978 0.94306 0.99709 1.00107 0.93731 0.92847 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.14 71.98 0.66 -2.37 15 2 C -0.09 -2.52 3.46 -9.72 -0.03 -2.56 15 3 H 0.08 2.03 8.14 -2.38 -0.02 2.01 15 4 C -0.11 -3.29 6.38 31.39 0.20 -3.09 15 5 C -0.11 -4.14 5.98 31.39 0.19 -3.95 15 6 C -0.08 -3.48 2.82 -9.72 -0.03 -3.50 15 7 H 0.05 2.33 8.14 -2.39 -0.02 2.31 15 8 C 0.02 0.98 3.68 29.85 0.11 1.09 15 9 C -0.61 -36.10 8.71 25.60 0.22 -35.87 15 10 H 0.05 2.85 7.73 -2.91 -0.02 2.83 15 11 C -0.04 -2.61 5.46 84.65 0.46 -2.15 15 12 N -0.94 -60.55 13.65 21.45 0.29 -60.26 15 13 Si 1.12 51.88 29.90 68.60 2.05 53.93 15 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 17 C -0.12 -4.04 5.75 31.89 0.18 -3.85 15 18 H 0.06 1.22 8.14 -2.39 -0.02 1.20 15 19 H 0.07 1.27 8.14 -2.39 -0.02 1.25 15 20 H 0.05 1.14 8.08 -2.38 -0.02 1.12 15 21 H 0.07 1.82 7.79 -2.39 -0.02 1.80 15 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 24 H 0.04 1.66 7.74 -2.39 -0.02 1.64 15 25 H -0.02 -0.90 7.88 -2.38 -0.02 -0.92 15 26 H -0.02 -1.13 8.00 -2.39 -0.02 -1.15 15 27 H 0.25 16.57 7.22 -92.70 -0.67 15.90 15 28 H 0.05 1.95 7.97 -2.39 -0.02 1.93 15 29 H 0.06 2.07 8.14 -2.38 -0.02 2.05 15 Total: -1.00 -66.30 235.66 5.49 -60.81 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: 1.18 Total: 1.76 kcal Atomic # 6 Polarization: -58.21 SS G_CDS: 1.96 Total: -56.24 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.29 Total: -60.26 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.05 Total: 53.93 kcal Total: -66.30 5.49 -60.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149630.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.427 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds