Wall clock time and date at job start Mon Mar 30 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.01536 * 2 1 4 4 C 1.54266 * 110.03543 * 238.60652 * 2 1 3 5 5 C 1.54882 * 104.19850 * 217.05962 * 4 2 1 6 6 C 1.54888 * 102.74933 * 37.93838 * 5 4 2 7 7 H 1.09005 * 110.48819 * 80.87135 * 6 5 4 8 8 C 1.52998 * 110.48822 * 203.38082 * 6 5 4 9 9 C 1.50706 * 109.47348 * 291.75921 * 8 6 5 10 10 H 1.08000 * 119.99302 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00436 * 179.72505 * 9 8 6 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46683 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99743 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99986 * 13 11 9 17 17 C 1.54090 * 109.96701 * 121.44951 * 2 1 3 18 18 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47197 * 299.94025 * 1 2 3 20 20 H 1.09001 * 109.47063 * 59.93857 * 1 2 3 21 21 H 1.09001 * 110.48677 * 98.37610 * 4 2 1 22 22 H 1.09011 * 110.48038 * 335.73640 * 4 2 1 23 23 H 1.09001 * 110.75705 * 279.62521 * 5 4 2 24 24 H 1.09002 * 110.76231 * 156.25448 * 5 4 2 25 25 H 1.09001 * 109.47671 * 171.76130 * 8 6 5 26 26 H 1.08998 * 109.47454 * 51.76128 * 8 6 5 27 27 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 28 28 H 1.08993 * 110.16194 * 0.14218 * 17 2 1 29 29 H 1.09000 * 110.00144 * 238.64423 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3144 -1.4994 -0.7200 6 6 2.8891 -1.9398 0.7027 7 1 2.2813 -2.8435 0.6567 8 6 4.1195 -2.1679 1.5829 9 6 4.8737 -3.3756 1.0889 10 1 4.5113 -3.9255 0.2330 11 6 6.0290 -3.7753 1.7264 12 7 6.4732 -3.1023 2.7654 13 14 6.9642 -5.2717 1.1137 14 1 6.2616 -5.8475 -0.0610 15 1 8.3387 -4.8699 0.7209 16 1 7.0352 -6.2877 2.1944 17 6 2.0562 -0.7556 1.2355 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5129 0.8905 20 1 -0.3633 0.5148 -0.8894 21 1 2.3290 -0.0528 -2.0258 22 1 1.3146 -1.4660 -1.5967 23 1 4.1713 -0.8272 -0.6763 24 1 3.5336 -2.3664 -1.3433 25 1 3.8039 -2.3332 2.6131 26 1 4.7665 -1.2919 1.5373 27 1 7.2862 -3.3832 3.2137 28 1 1.2229 -1.1243 1.8335 29 1 2.6845 -0.0973 1.8356 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261149633.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:00 Heat of formation + Delta-G solvation = -40.726559 kcal Electronic energy + Delta-G solvation = -9695.814792 eV Core-core repulsion = 8003.200509 eV Total energy + Delta-G solvation = -1692.614283 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.96207 -33.24020 -31.18222 -28.83476 -26.71736 -24.12294 -22.07245 -19.53028 -18.59327 -16.30292 -14.94393 -14.39547 -14.24488 -13.06931 -12.80813 -12.47431 -12.17447 -11.88549 -11.09941 -11.09183 -10.72096 -10.39955 -10.31930 -10.19766 -10.07711 -9.94130 -9.46520 -9.03035 -8.85178 -8.28521 -5.93685 -3.94930 3.34202 3.41593 3.45885 4.50961 5.16833 5.21557 5.28857 5.42251 5.76802 5.86067 6.00311 6.04098 6.13108 6.29360 6.36162 6.39592 6.56187 6.59244 6.70819 6.92247 7.02069 7.14555 7.30785 7.75685 7.92710 8.07562 8.51877 9.12379 9.68592 11.17796 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.093014 B = 0.010952 C = 0.010290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.958887 B = 2555.959832 C = 2720.399796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.062 0.938 4 C -0.123 4.123 5 C -0.106 4.106 6 C -0.084 4.084 7 H 0.057 0.943 8 C 0.028 3.972 9 C -0.512 4.512 10 H 0.055 0.945 11 C 0.054 3.946 12 N -0.898 5.898 13 Si 0.889 3.111 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.118 4.118 18 H 0.053 0.947 19 H 0.049 0.951 20 H 0.046 0.954 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.258 0.742 28 H 0.053 0.947 29 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.103 4.257 -5.254 10.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.081 0.919 4 C -0.160 4.160 5 C -0.144 4.144 6 C -0.102 4.102 7 H 0.075 0.925 8 C -0.009 4.009 9 C -0.551 4.551 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.717 3.283 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.156 4.156 18 H 0.072 0.928 19 H 0.068 0.932 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.970 4.262 -5.127 10.390 hybrid contribution 0.630 -0.817 -0.215 1.054 sum -7.340 3.445 -5.342 9.709 Atomic orbital electron populations 1.21876 0.95969 1.01378 1.00648 1.21795 0.94725 0.99096 0.96056 0.91915 1.22493 0.98420 0.98585 0.96540 1.22407 0.95990 0.99062 0.96901 1.22032 0.97707 0.95400 0.95094 0.92478 1.19153 0.90938 0.96619 0.94200 1.21318 1.08066 1.11952 1.13731 0.92686 1.25029 0.97551 0.96906 0.95118 1.69981 1.22860 1.39915 1.21013 0.86584 0.79834 0.83129 0.78757 1.19780 1.21108 1.21115 1.22383 0.98952 0.97924 0.96337 0.92803 0.93228 0.93469 0.92871 0.92355 0.91906 0.92190 0.96836 0.96562 0.93192 0.92848 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.84 37.16 0.33 -1.49 15 2 C -0.10 -1.50 3.51 -89.39 -0.31 -1.82 15 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 4 C -0.12 -1.93 6.36 -25.08 -0.16 -2.09 15 5 C -0.11 -2.05 5.92 -24.74 -0.15 -2.20 15 6 C -0.08 -1.79 2.81 -88.96 -0.25 -2.04 15 7 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 8 C 0.03 0.74 4.33 -27.88 -0.12 0.62 15 9 C -0.51 -14.70 8.71 -34.44 -0.30 -15.00 15 10 H 0.05 1.54 7.73 -52.49 -0.41 1.14 15 11 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 12 N -0.90 -27.49 13.29 55.43 0.74 -26.76 15 13 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 15 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 17 C -0.12 -2.14 6.04 -25.50 -0.15 -2.29 15 18 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.06 0.87 7.85 -51.92 -0.41 0.46 15 23 H 0.06 1.27 8.00 -51.93 -0.42 0.85 15 24 H 0.06 1.18 8.14 -51.93 -0.42 0.75 15 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 15 26 H 0.02 0.45 8.06 -51.93 -0.42 0.03 15 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 28 H 0.05 0.91 7.68 -51.93 -0.40 0.51 15 29 H 0.06 1.11 7.84 -51.93 -0.41 0.71 15 LS Contribution 236.73 15.07 3.57 3.57 Total: -1.00 -29.78 236.73 -6.90 -36.68 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -4.97 Total: -5.65 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -1.21 Total: -24.83 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.78 -6.90 -36.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149633.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.044 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds