Wall clock time and date at job start Mon Mar 30 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.01536 * 2 1 4 4 C 1.54266 * 110.03543 * 238.60652 * 2 1 3 5 5 C 1.54882 * 104.19850 * 217.05962 * 4 2 1 6 6 C 1.54888 * 102.74933 * 37.93838 * 5 4 2 7 7 H 1.09005 * 110.48819 * 80.87135 * 6 5 4 8 8 C 1.52998 * 110.48822 * 203.38082 * 6 5 4 9 9 C 1.50706 * 109.47348 * 291.75921 * 8 6 5 10 10 H 1.08000 * 119.99302 * 359.97438 * 9 8 6 11 11 C 1.37871 * 120.00436 * 179.72505 * 9 8 6 12 12 N 1.31515 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46683 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47426 * 119.99743 * 13 11 9 16 16 H 1.48501 * 109.46833 * 239.99986 * 13 11 9 17 17 C 1.54090 * 109.96701 * 121.44951 * 2 1 3 18 18 H 1.08997 * 109.47042 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47197 * 299.94025 * 1 2 3 20 20 H 1.09001 * 109.47063 * 59.93857 * 1 2 3 21 21 H 1.09001 * 110.48677 * 98.37610 * 4 2 1 22 22 H 1.09011 * 110.48038 * 335.73640 * 4 2 1 23 23 H 1.09001 * 110.75705 * 279.62521 * 5 4 2 24 24 H 1.09002 * 110.76231 * 156.25448 * 5 4 2 25 25 H 1.09001 * 109.47671 * 171.76130 * 8 6 5 26 26 H 1.08998 * 109.47454 * 51.76128 * 8 6 5 27 27 H 0.97004 * 120.00247 * 180.02562 * 12 11 9 28 28 H 1.08993 * 110.16194 * 0.14218 * 17 2 1 29 29 H 1.09000 * 110.00144 * 238.64423 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0585 -0.7550 -1.2371 5 6 3.3144 -1.4994 -0.7200 6 6 2.8891 -1.9398 0.7027 7 1 2.2813 -2.8435 0.6567 8 6 4.1195 -2.1679 1.5829 9 6 4.8737 -3.3756 1.0889 10 1 4.5113 -3.9255 0.2330 11 6 6.0290 -3.7753 1.7264 12 7 6.4732 -3.1023 2.7654 13 14 6.9642 -5.2717 1.1137 14 1 6.2616 -5.8475 -0.0610 15 1 8.3387 -4.8699 0.7209 16 1 7.0352 -6.2877 2.1944 17 6 2.0562 -0.7556 1.2355 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5129 0.8905 20 1 -0.3633 0.5148 -0.8894 21 1 2.3290 -0.0528 -2.0258 22 1 1.3146 -1.4660 -1.5967 23 1 4.1713 -0.8272 -0.6763 24 1 3.5336 -2.3664 -1.3433 25 1 3.8039 -2.3332 2.6131 26 1 4.7665 -1.2919 1.5373 27 1 7.2862 -3.3832 3.2137 28 1 1.2229 -1.1243 1.8335 29 1 2.6845 -0.0973 1.8356 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261149633.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:59 Heat of formation + Delta-G solvation = -57.325069 kcal Electronic energy + Delta-G solvation = -9696.534557 eV Core-core repulsion = 8003.200509 eV Total energy + Delta-G solvation = -1693.334048 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.44148 -35.29513 -32.91325 -30.35041 -28.49451 -25.70997 -23.93791 -20.99318 -20.13352 -18.49380 -16.70881 -16.03925 -15.84350 -14.51743 -14.32376 -14.15947 -13.83507 -13.46209 -12.92237 -12.78777 -12.56983 -12.23451 -11.88366 -11.64478 -11.46508 -11.34537 -11.12927 -11.03247 -10.79608 -10.53221 -8.18518 -6.28811 1.38994 1.39251 1.52774 2.41311 3.14252 3.83559 3.90297 3.97818 4.49425 4.61486 4.69054 4.74920 4.82119 4.88847 5.01243 5.09760 5.13271 5.23620 5.34370 5.38404 5.43308 5.50151 5.58877 5.65498 5.82411 5.90000 6.29508 6.87977 7.40065 8.93748 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.093014 B = 0.010952 C = 0.010290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 300.958887 B = 2555.959832 C = 2720.399796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.107 4.107 6 C -0.085 4.085 7 H 0.054 0.946 8 C 0.033 3.967 9 C -0.531 4.531 10 H 0.059 0.941 11 C -0.004 4.004 12 N -0.937 5.937 13 Si 0.964 3.036 14 H -0.262 1.262 15 H -0.278 1.278 16 H -0.278 1.278 17 C -0.116 4.116 18 H 0.052 0.948 19 H 0.057 0.943 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.053 0.947 25 H -0.017 1.017 26 H -0.012 1.012 27 H 0.262 0.738 28 H 0.063 0.937 29 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 4.057 -6.728 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.145 4.145 6 C -0.103 4.103 7 H 0.072 0.928 8 C -0.004 4.004 9 C -0.569 4.569 10 H 0.077 0.923 11 C -0.201 4.201 12 N -0.578 5.578 13 Si 0.789 3.211 14 H -0.185 1.185 15 H -0.204 1.204 16 H -0.204 1.204 17 C -0.154 4.154 18 H 0.071 0.929 19 H 0.076 0.924 20 H 0.086 0.914 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.001 0.999 26 H 0.006 0.994 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.971 4.067 -6.609 11.862 hybrid contribution 0.958 -0.739 0.293 1.245 sum -8.013 3.328 -6.317 10.733 Atomic orbital electron populations 1.21833 0.93592 1.01843 1.02150 1.21778 0.96681 0.98859 0.93973 0.91071 1.22445 0.96485 0.98863 0.97150 1.22354 0.97505 0.99008 0.95609 1.21937 0.95833 0.96873 0.95669 0.92776 1.19042 0.92697 0.94939 0.93674 1.21701 1.08653 1.12666 1.13915 0.92289 1.25998 0.98641 1.00277 0.95181 1.70117 1.23512 1.41842 1.22330 0.85413 0.78290 0.78904 0.78542 1.18546 1.20394 1.20413 1.22344 0.98548 0.96658 0.97823 0.92866 0.92396 0.91393 0.90702 0.90949 0.93547 0.92839 0.99855 0.99358 0.92893 0.91841 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.84 71.98 0.64 -2.40 15 2 C -0.09 -2.65 3.51 -9.99 -0.04 -2.69 15 3 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 4 C -0.11 -3.21 6.36 31.67 0.20 -3.01 15 5 C -0.11 -4.09 5.92 31.88 0.19 -3.90 15 6 C -0.08 -3.64 2.81 -9.72 -0.03 -3.66 15 7 H 0.05 2.34 8.14 -2.38 -0.02 2.32 15 8 C 0.03 1.84 4.33 29.85 0.13 1.97 15 9 C -0.53 -31.09 8.71 25.60 0.22 -30.87 15 10 H 0.06 3.32 7.73 -2.91 -0.02 3.30 15 11 C 0.00 -0.24 5.46 84.65 0.46 0.23 15 12 N -0.94 -58.69 13.29 21.45 0.28 -58.40 15 13 Si 0.96 45.33 29.54 68.60 2.03 47.35 15 14 H -0.26 -11.70 7.11 99.48 0.71 -10.99 15 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 17 C -0.12 -4.13 6.04 31.39 0.19 -3.94 15 18 H 0.05 1.19 8.14 -2.39 -0.02 1.17 15 19 H 0.06 1.19 8.14 -2.39 -0.02 1.18 15 20 H 0.07 1.25 8.14 -2.39 -0.02 1.23 15 21 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.07 1.90 7.85 -2.38 -0.02 1.88 15 23 H 0.05 1.89 8.00 -2.39 -0.02 1.87 15 24 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 25 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 15 26 H -0.01 -0.71 8.06 -2.39 -0.02 -0.73 15 27 H 0.26 15.35 8.31 -92.71 -0.77 14.58 15 28 H 0.06 2.10 7.68 -2.39 -0.02 2.08 15 29 H 0.04 1.69 7.84 -2.39 -0.02 1.67 15 Total: -1.00 -64.44 236.73 5.36 -59.08 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: 1.08 Total: 0.24 kcal Atomic # 6 Polarization: -50.24 SS G_CDS: 1.97 Total: -48.27 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.28 Total: -58.40 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -64.44 5.36 -59.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261149633.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.759 kcal (2) G-P(sol) polarization free energy of solvation -64.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds