Wall clock time and date at job start Mon Mar 30 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00082 * 2 1 4 4 H 1.48502 * 109.46921 * 239.99435 * 3 2 1 5 5 H 1.48491 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47201 * 120.00242 * 3 2 1 7 7 C 1.37876 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47579 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47386 * 179.97438 * 10 9 7 12 12 N 1.28247 * 122.70698 * 359.97438 * 11 10 9 13 13 C 1.46974 * 110.18732 * 180.02562 * 12 11 10 14 14 C 1.54214 * 103.83812 * 359.97438 * 13 12 11 15 15 N 1.36673 * 122.65554 * 179.89682 * 11 10 9 16 16 H 0.97002 * 119.99675 * 0.02562 * 1 2 3 17 17 H 1.09007 * 109.46889 * 59.99302 * 9 7 2 18 18 H 1.09001 * 109.47026 * 300.00059 * 9 7 2 19 19 H 1.09007 * 109.47174 * 59.99974 * 10 9 7 20 20 H 1.09001 * 109.47395 * 300.00330 * 10 9 7 21 21 H 1.09004 * 110.55007 * 241.40607 * 13 12 11 22 22 H 1.09002 * 110.55176 * 118.59000 * 13 12 11 23 23 H 1.09002 * 110.69957 * 118.39369 * 14 13 12 24 24 H 1.09001 * 110.70172 * 241.44052 * 14 13 12 25 25 H 0.97004 * 126.03604 * 359.96472 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 7 0.2106 -5.0277 0.0021 13 6 -0.2309 -6.4296 0.0031 14 6 1.0865 -7.2312 0.0019 15 7 2.1194 -6.1812 -0.0008 16 1 -0.4850 0.8401 -0.0004 17 1 0.6246 -2.5570 -0.8897 18 1 0.6240 -2.5567 0.8903 19 1 2.8719 -3.6044 0.8906 20 1 2.8719 -3.6044 -0.8894 21 1 -0.8124 -6.6482 -0.8925 22 1 -0.8111 -6.6474 0.8999 23 1 1.1646 -7.8453 0.8991 24 1 1.1613 -7.8482 -0.8935 25 1 3.0783 -6.3278 -0.0032 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261184378.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:54 Heat of formation + Delta-G solvation = -6.025248 kcal Electronic energy + Delta-G solvation = -9261.066773 eV Core-core repulsion = 7466.416908 eV Total energy + Delta-G solvation = -1794.649864 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.096 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.78147 -35.78226 -33.51512 -32.39810 -30.04075 -26.93968 -23.60493 -23.05873 -20.18060 -18.68005 -17.56825 -16.78967 -16.46639 -15.15197 -15.08522 -14.36966 -13.94424 -13.29012 -13.05585 -12.93022 -12.71462 -12.43137 -12.38215 -11.48951 -11.44722 -11.18072 -10.57172 -10.48526 -8.91433 -8.12004 -6.25144 1.44244 1.48540 1.56130 1.71987 2.44498 2.64436 3.20659 3.65059 3.90839 4.22589 4.54186 4.64843 4.66093 4.67808 5.02634 5.10359 5.19454 5.49895 5.59172 5.79674 5.97098 6.28311 6.92935 7.05524 7.31071 7.44367 9.00052 Molecular weight = 168.10amu Principal moments of inertia in cm(-1) A = 0.117045 B = 0.010038 C = 0.009342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 239.166703 B = 2788.612963 C = 2996.580135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.051 3.949 10 C -0.051 4.051 11 C 0.368 3.632 12 N -0.623 5.623 13 C 0.010 3.990 14 C 0.083 3.917 15 N -0.754 5.754 16 H 0.262 0.738 17 H -0.014 1.014 18 H -0.014 1.014 19 H 0.090 0.910 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.973 -11.884 0.002 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.089 0.911 9 C 0.013 3.987 10 C -0.090 4.090 11 C 0.090 3.910 12 N -0.353 5.353 13 C -0.120 4.120 14 C -0.042 4.042 15 N -0.401 5.401 16 H 0.070 0.930 17 H 0.005 0.995 18 H 0.005 0.995 19 H 0.108 0.892 20 H 0.108 0.892 21 H 0.100 0.900 22 H 0.100 0.900 23 H 0.106 0.894 24 H 0.107 0.893 25 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 4.909 -11.339 0.002 12.356 hybrid contribution 0.716 0.142 -0.001 0.730 sum 5.624 -11.198 0.000 12.531 Atomic orbital electron populations 1.70173 1.08158 1.27656 1.51596 1.26066 0.95682 1.03648 0.94776 0.85436 0.78112 0.77720 0.79336 1.18878 1.21308 1.18868 1.21771 0.93867 0.92171 1.50680 0.91142 1.18607 0.93472 0.91578 0.95059 1.20444 0.97585 0.87822 1.03135 1.23421 0.90195 0.89223 0.88187 1.74350 1.10799 1.19437 1.30745 1.23274 0.97867 0.88242 1.02574 1.22641 0.87576 0.90773 1.03228 1.46048 1.09356 1.03501 1.81183 0.92978 0.99520 0.99506 0.89213 0.89204 0.90006 0.89994 0.89351 0.89319 0.73542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.80 13.29 21.45 0.28 -59.51 15 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 15 3 Si 0.97 44.86 29.54 68.60 2.03 46.88 15 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 15 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 15 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 15 7 C -0.55 -31.64 9.11 25.60 0.23 -31.41 15 8 H 0.07 3.74 7.74 -2.91 -0.02 3.72 15 9 C 0.05 2.83 4.29 29.85 0.13 2.96 15 10 C -0.05 -2.12 5.78 29.84 0.17 -1.95 15 11 C 0.37 14.13 7.66 138.24 1.06 15.19 15 12 N -0.62 -27.06 10.58 -335.21 -3.55 -30.60 15 13 C 0.01 0.31 8.06 86.70 0.70 1.01 15 14 C 0.08 1.93 8.12 86.64 0.70 2.63 15 15 N -0.75 -20.52 6.56 -334.84 -2.20 -22.72 15 16 H 0.26 15.69 8.31 -92.71 -0.77 14.92 15 17 H -0.01 -0.86 8.12 -2.38 -0.02 -0.88 15 18 H -0.01 -0.85 8.12 -2.39 -0.02 -0.87 15 19 H 0.09 3.39 8.14 -2.38 -0.02 3.37 15 20 H 0.09 3.40 8.14 -2.39 -0.02 3.38 15 21 H 0.08 2.40 8.14 -2.38 -0.02 2.38 15 22 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15 23 H 0.09 1.64 8.14 -2.39 -0.02 1.63 15 24 H 0.09 1.65 8.14 -2.39 -0.02 1.63 15 25 H 0.42 8.70 8.96 -92.71 -0.83 7.87 15 Total: -1.00 -72.31 219.88 0.36 -71.95 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.34 Total: 5.36 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 3.46 Total: -11.36 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -5.46 Total: -112.84 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -72.31 0.36 -71.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261184378.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.925 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds