Wall clock time and date at job start Mon Mar 30 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 C 1.50692 * 109.47320 * 120.00284 * 2 1 3 5 5 H 1.08003 * 120.00102 * 119.99983 * 4 2 1 6 6 C 1.37885 * 120.00201 * 300.00036 * 4 2 1 7 7 N 1.31509 * 119.99699 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99943 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47602 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47095 * 119.99979 * 8 6 4 11 11 H 1.48501 * 109.47461 * 239.99720 * 8 6 4 12 12 C 1.50698 * 109.47063 * 240.00590 * 2 1 3 13 13 N 1.28558 * 122.65411 * 264.89843 * 12 2 1 14 14 C 1.46974 * 110.00815 * 179.97438 * 13 12 2 15 15 C 1.54220 * 103.96218 * 0.12505 * 14 13 12 16 16 N 1.36291 * 122.70760 * 84.99585 * 12 2 1 17 17 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 18 18 H 1.09004 * 109.46653 * 299.99516 * 1 2 3 19 19 H 1.08999 * 109.47112 * 59.99458 * 1 2 3 20 20 H 0.96999 * 119.99945 * 180.02562 * 7 6 4 21 21 H 1.09002 * 110.55423 * 241.46509 * 14 13 12 22 22 H 1.09001 * 110.55542 * 118.78516 * 14 13 12 23 23 H 1.09005 * 110.69811 * 118.32058 * 15 14 13 24 24 H 1.09001 * 110.69631 * 241.53305 * 15 14 13 25 25 H 0.97001 * 125.83168 * 359.97438 * 16 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8295 2.6035 8 14 2.3215 -1.1205 4.0078 9 1 3.1466 -2.2872 3.6036 10 1 3.1468 -0.1876 4.8164 11 1 1.1663 -1.5869 4.8160 12 6 2.0324 -0.7103 -1.2305 13 7 2.3543 -1.9549 -1.2302 14 6 2.8048 -2.3582 -2.5698 15 6 2.6901 -1.0670 -3.4053 16 7 2.1835 -0.0846 -2.4319 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8901 19 1 -0.3633 0.5139 -0.8899 20 1 0.7089 1.1610 3.4845 21 1 2.1555 -3.1347 -2.9743 22 1 3.8383 -2.7030 -2.5384 23 1 3.6665 -0.7656 -3.7848 24 1 1.9817 -1.1990 -4.2232 25 1 1.9907 0.8483 -2.6145 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261221943.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:06 Heat of formation + Delta-G solvation = 24.314105 kcal Electronic energy + Delta-G solvation = -9606.078837 eV Core-core repulsion = 7812.744586 eV Total energy + Delta-G solvation = -1793.334251 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.096 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.13233 -34.08201 -30.90151 -30.73924 -27.92651 -25.04410 -21.93197 -21.66154 -18.63592 -16.34239 -15.84978 -15.19499 -14.34624 -13.59279 -12.72937 -12.34166 -11.97775 -11.70565 -11.56565 -11.10469 -10.84795 -10.47092 -10.12408 -9.84193 -9.63368 -9.04749 -8.66862 -8.30559 -7.26328 -5.93778 -3.95197 3.38241 3.45617 3.53450 3.61799 4.16547 4.56264 5.15769 5.39217 5.49864 5.59399 5.85415 6.08115 6.35856 6.75173 6.79470 7.01695 7.10442 7.18055 7.60195 7.89163 8.13843 8.33797 8.62968 9.09322 9.17343 9.68611 11.14107 Molecular weight = 168.10amu Principal moments of inertia in cm(-1) A = 0.071576 B = 0.014715 C = 0.012959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.100073 B = 1902.398974 C = 2160.151366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.093 3.907 3 H 0.042 0.958 4 C -0.489 4.489 5 H 0.075 0.925 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.285 1.285 12 C 0.392 3.608 13 N -0.571 5.571 14 C 0.017 3.983 15 C 0.076 3.924 16 N -0.768 5.768 17 H 0.033 0.967 18 H 0.092 0.908 19 H 0.007 0.993 20 H 0.259 0.741 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 -0.748 -8.019 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.073 3.927 3 H 0.060 0.940 4 C -0.528 4.528 5 H 0.093 0.907 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.212 1.212 12 C 0.115 3.885 13 N -0.299 5.299 14 C -0.114 4.114 15 C -0.050 4.050 16 N -0.412 5.412 17 H 0.052 0.948 18 H 0.110 0.890 19 H 0.026 0.974 20 H 0.068 0.932 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.455 -1.579 -7.392 7.697 hybrid contribution 0.283 0.514 -0.132 0.602 sum 1.738 -1.065 -7.524 7.795 Atomic orbital electron populations 1.21730 0.96641 0.99912 1.00467 1.17760 0.93230 0.94896 0.86794 0.94025 1.21226 1.30422 1.12251 0.88856 0.90652 1.24974 0.95359 0.95149 0.99114 1.69883 1.37536 1.23355 1.23248 0.86421 0.78557 0.79726 0.82663 1.19599 1.21289 1.21151 1.24181 0.87085 0.89727 0.87493 1.74550 1.27423 1.11595 1.16328 1.23116 1.00745 0.95970 0.91551 1.22481 0.98157 0.91523 0.92861 1.46157 1.73048 1.12437 1.09599 0.94790 0.88960 0.97363 0.93161 0.91275 0.91188 0.92297 0.92354 0.75698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.95 37.16 0.33 -2.80 15 2 C 0.09 2.38 2.77 -92.92 -0.26 2.12 15 3 H 0.04 1.10 8.14 -51.93 -0.42 0.67 15 4 C -0.49 -13.87 8.36 -34.44 -0.29 -14.16 15 5 H 0.08 2.23 7.03 -52.48 -0.37 1.86 15 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 15 7 N -0.90 -25.68 11.32 55.43 0.63 -25.06 15 8 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 15 9 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 12 C 0.39 8.98 6.77 -155.85 -1.06 7.92 15 13 N -0.57 -13.50 10.39 -57.33 -0.60 -14.09 15 14 C 0.02 0.30 8.05 -3.15 -0.03 0.28 15 15 C 0.08 1.19 8.13 -2.98 -0.02 1.17 15 16 N -0.77 -14.06 6.53 -57.21 -0.37 -14.44 15 17 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 18 H 0.09 2.43 6.07 -51.93 -0.32 2.11 15 19 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 15 20 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 22 H 0.07 1.19 8.14 -51.93 -0.42 0.76 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.41 6.42 8.96 -40.82 -0.37 6.05 15 LS Contribution 214.80 15.07 3.24 3.24 Total: -1.00 -30.27 214.80 -6.68 -36.95 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -3.14 Total: 0.45 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.41 Total: -4.05 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.34 Total: -53.59 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -30.27 -6.68 -36.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261221943.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.262 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds