Wall clock time and date at job start Mon Mar 30 2020 02:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37166 * 126.01594 * 2 1 4 4 C 1.38080 * 107.04868 * 180.15333 * 3 2 1 5 5 C 1.40025 * 126.29525 * 179.89999 * 4 3 2 6 6 H 1.08006 * 120.00333 * 5.93325 * 5 4 3 7 7 C 1.39964 * 120.00092 * 185.93613 * 5 4 3 8 8 N 1.30930 * 119.99791 * 6.45688 * 7 5 4 9 9 Si 1.86803 * 119.99842 * 186.45984 * 7 5 4 10 10 H 1.48503 * 109.46904 * 265.01181 * 9 7 5 11 11 H 1.48501 * 109.47385 * 25.00892 * 9 7 5 12 12 H 1.48503 * 109.47220 * 145.01342 * 9 7 5 13 13 O 1.35700 * 107.41013 * 359.64067 * 4 3 2 14 14 C 1.34264 * 108.59597 * 0.22433 * 13 4 3 15 15 O 1.21601 * 125.51312 * 180.02562 * 14 13 4 16 16 H 1.08998 * 109.47158 * 180.27122 * 1 2 3 17 17 H 1.08999 * 109.47109 * 300.27062 * 1 2 3 18 18 H 1.08998 * 109.46880 * 60.26861 * 1 2 3 19 19 H 1.07991 * 126.47494 * 0.02562 * 3 2 1 20 20 H 0.97005 * 119.99831 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.1095 0.0000 4 6 3.5774 0.6607 -0.0035 5 6 4.7281 1.4586 -0.0067 6 1 4.6420 2.5308 0.0901 7 6 5.9898 0.8666 -0.1355 8 7 6.0893 -0.4159 -0.3794 9 14 7.5317 1.9064 0.0407 10 1 7.9907 2.3426 -1.3025 11 1 7.2319 3.0993 0.8728 12 1 8.5982 1.1039 0.6918 13 8 3.5405 -0.6958 0.0025 14 6 2.2568 -1.0892 0.0047 15 8 1.8715 -2.2426 0.0104 16 1 -0.3633 -1.0276 0.0049 17 1 -0.3633 0.5180 0.8875 18 1 -0.3633 0.5096 -0.8924 19 1 1.9467 2.1394 0.0004 20 1 6.9638 -0.8263 -0.4683 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261250927.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:25 Heat of formation + Delta-G solvation = -45.802575 kcal Electronic energy + Delta-G solvation = -9528.984533 eV Core-core repulsion = 7499.058037 eV Total energy + Delta-G solvation = -2029.926495 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.24814 -36.26142 -34.59863 -33.56836 -29.40017 -27.24281 -24.40473 -21.06810 -20.42877 -17.91130 -15.76558 -15.72201 -15.19253 -14.17724 -14.13619 -13.12884 -13.09107 -12.04345 -11.89086 -11.58621 -11.22217 -11.09793 -10.80397 -10.31363 -9.63378 -9.44948 -9.36702 -7.05933 -6.88788 -4.45288 2.86206 3.01653 3.06896 3.58626 3.81452 3.84923 3.87712 4.95271 5.06700 5.61570 5.88207 6.05247 6.55833 6.95314 6.99572 7.21802 7.77919 7.94583 8.47174 8.49954 9.13590 9.28037 10.09397 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.098245 B = 0.014867 C = 0.013039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.932288 B = 1882.947458 C = 2146.903889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.522 5.522 3 C -0.298 4.298 4 C 0.203 3.797 5 C -0.445 4.445 6 H 0.108 0.892 7 C 0.068 3.932 8 N -0.777 5.777 9 Si 0.926 3.074 10 H -0.268 1.268 11 H -0.258 1.258 12 H -0.274 1.274 13 O -0.213 6.213 14 C 0.573 3.427 15 O -0.569 6.569 16 H 0.077 0.923 17 H 0.059 0.941 18 H 0.059 0.941 19 H 0.156 0.844 20 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.909 4.818 0.464 5.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.254 5.254 3 C -0.413 4.413 4 C 0.154 3.846 5 C -0.475 4.475 6 H 0.126 0.874 7 C -0.153 4.153 8 N -0.401 5.401 9 Si 0.749 3.251 10 H -0.193 1.193 11 H -0.182 1.182 12 H -0.199 1.199 13 O -0.115 6.115 14 C 0.330 3.670 15 O -0.463 6.463 16 H 0.095 0.905 17 H 0.077 0.923 18 H 0.077 0.923 19 H 0.173 0.827 20 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.805 3.865 0.425 4.287 hybrid contribution 0.522 0.517 0.039 0.736 sum -1.283 4.381 0.465 4.589 Atomic orbital electron populations 1.21353 0.77702 1.02877 1.01213 1.44663 1.06350 1.07037 1.67379 1.21491 0.87934 0.91036 1.40805 1.19002 0.93399 0.77562 0.94681 1.18629 0.87725 0.94453 1.46681 0.87405 1.26121 1.01606 0.95375 0.92240 1.69844 1.27378 1.11245 1.31680 0.86006 0.79494 0.80149 0.79429 1.19260 1.18195 1.19919 1.85348 1.24681 1.23974 1.77458 1.18952 0.80295 0.85360 0.82379 1.90900 1.75816 1.17214 1.62354 0.90451 0.92278 0.92259 0.82694 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.95 11.19 59.85 0.67 2.62 14 2 N -0.52 -12.48 3.14 -128.04 -0.40 -12.88 14 3 C -0.30 -7.24 11.56 -15.22 -0.18 -7.41 14 4 C 0.20 5.56 6.74 -38.97 -0.26 5.29 14 5 C -0.44 -11.50 9.32 -38.27 -0.36 -11.86 14 6 H 0.11 2.52 7.85 -52.48 -0.41 2.10 14 7 C 0.07 1.70 5.49 -17.29 -0.09 1.60 14 8 N -0.78 -20.93 12.08 55.55 0.67 -20.26 14 9 Si 0.93 18.05 29.57 -169.99 -5.03 13.03 14 10 H -0.27 -5.10 7.11 56.52 0.40 -4.70 14 11 H -0.26 -4.86 7.11 56.52 0.40 -4.46 14 12 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 13 O -0.21 -6.32 9.14 -22.49 -0.21 -6.53 14 14 C 0.57 15.97 9.08 54.00 0.49 16.46 14 15 O -0.57 -16.63 17.57 -18.99 -0.33 -16.97 14 16 H 0.08 1.34 7.70 -51.93 -0.40 0.94 14 17 H 0.06 0.89 8.14 -51.93 -0.42 0.47 14 18 H 0.06 0.90 8.14 -51.93 -0.42 0.48 14 19 H 0.16 3.30 8.06 -52.49 -0.42 2.88 14 20 H 0.29 6.93 8.30 -40.82 -0.34 6.59 14 LS Contribution 194.40 15.07 2.93 2.93 Total: -1.00 -31.24 194.40 -3.31 -34.55 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -1.21 Total: -0.58 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 0.27 Total: 6.71 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.27 Total: -33.14 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.54 Total: -23.49 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 2.93 Total: 2.93 kcal Total: -31.24 -3.31 -34.55 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261250927.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.250 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds