Wall clock time and date at job start Mon Mar 30 2020 02:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37166 * 126.01594 * 2 1 4 4 C 1.38080 * 107.04868 * 180.15333 * 3 2 1 5 5 C 1.40025 * 126.29525 * 179.89999 * 4 3 2 6 6 H 1.08006 * 120.00333 * 5.93325 * 5 4 3 7 7 C 1.39964 * 120.00092 * 185.93613 * 5 4 3 8 8 N 1.30930 * 119.99791 * 6.45688 * 7 5 4 9 9 Si 1.86803 * 119.99842 * 186.45984 * 7 5 4 10 10 H 1.48503 * 109.46904 * 265.01181 * 9 7 5 11 11 H 1.48501 * 109.47385 * 25.00892 * 9 7 5 12 12 H 1.48503 * 109.47220 * 145.01342 * 9 7 5 13 13 O 1.35700 * 107.41013 * 359.64067 * 4 3 2 14 14 C 1.34264 * 108.59597 * 0.22433 * 13 4 3 15 15 O 1.21601 * 125.51312 * 180.02562 * 14 13 4 16 16 H 1.08998 * 109.47158 * 180.27122 * 1 2 3 17 17 H 1.08999 * 109.47109 * 300.27062 * 1 2 3 18 18 H 1.08998 * 109.46880 * 60.26861 * 1 2 3 19 19 H 1.07991 * 126.47494 * 0.02562 * 3 2 1 20 20 H 0.97005 * 119.99831 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.1095 0.0000 4 6 3.5774 0.6607 -0.0035 5 6 4.7281 1.4586 -0.0067 6 1 4.6420 2.5308 0.0901 7 6 5.9898 0.8666 -0.1355 8 7 6.0893 -0.4159 -0.3794 9 14 7.5317 1.9064 0.0407 10 1 7.9907 2.3426 -1.3025 11 1 7.2319 3.0993 0.8728 12 1 8.5982 1.1039 0.6918 13 8 3.5405 -0.6958 0.0025 14 6 2.2568 -1.0892 0.0047 15 8 1.8715 -2.2426 0.0104 16 1 -0.3633 -1.0276 0.0049 17 1 -0.3633 0.5180 0.8875 18 1 -0.3633 0.5096 -0.8924 19 1 1.9467 2.1394 0.0004 20 1 6.9638 -0.8263 -0.4683 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261250927.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:24 Heat of formation + Delta-G solvation = -67.132925 kcal Electronic energy + Delta-G solvation = -9529.909486 eV Core-core repulsion = 7499.058037 eV Total energy + Delta-G solvation = -2030.851449 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.29183 -38.36873 -36.54195 -35.48225 -31.35100 -28.92457 -26.33517 -23.06579 -22.41483 -19.82609 -17.79761 -17.76447 -16.99504 -16.11222 -16.02851 -14.88123 -14.65347 -13.91768 -13.56626 -13.38487 -13.07117 -12.80553 -12.61356 -11.95413 -11.55305 -11.44428 -11.17043 -9.06777 -8.74802 -6.40431 1.21247 1.43461 1.61676 1.75610 1.81734 1.98726 2.20093 2.98144 3.13910 4.15729 4.57046 4.72697 4.76057 4.98708 5.12320 5.30441 5.87719 6.00895 6.52929 6.58407 7.11229 7.24926 8.27526 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.098245 B = 0.014867 C = 0.013039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 284.932288 B = 1882.947458 C = 2146.903889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.510 5.510 3 C -0.274 4.274 4 C 0.155 3.845 5 C -0.468 4.468 6 H 0.131 0.869 7 C 0.018 3.982 8 N -0.830 5.830 9 Si 1.010 2.990 10 H -0.258 1.258 11 H -0.242 1.242 12 H -0.274 1.274 13 O -0.244 6.244 14 C 0.544 3.456 15 O -0.600 6.600 16 H 0.076 0.924 17 H 0.092 0.908 18 H 0.091 0.909 19 H 0.193 0.807 20 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 7.039 0.622 7.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.240 5.240 3 C -0.390 4.390 4 C 0.106 3.894 5 C -0.498 4.498 6 H 0.148 0.852 7 C -0.198 4.198 8 N -0.456 5.456 9 Si 0.829 3.171 10 H -0.183 1.183 11 H -0.165 1.165 12 H -0.199 1.199 13 O -0.146 6.146 14 C 0.301 3.699 15 O -0.497 6.497 16 H 0.095 0.905 17 H 0.111 0.889 18 H 0.109 0.891 19 H 0.210 0.790 20 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.044 6.115 0.583 6.474 hybrid contribution 0.451 -0.139 -0.017 0.472 sum -1.594 5.976 0.567 6.211 Atomic orbital electron populations 1.21845 0.73885 1.03994 1.04382 1.44996 1.08555 1.05625 1.64858 1.22075 0.87012 0.92326 1.37544 1.19768 0.95568 0.77035 0.97019 1.19203 0.88153 0.95502 1.46894 0.85152 1.27282 1.05265 0.96419 0.90836 1.69962 1.28677 1.13667 1.33292 0.84764 0.74215 0.78306 0.79848 1.18289 1.16502 1.19866 1.85277 1.26121 1.25590 1.77619 1.19226 0.80406 0.86067 0.84170 1.90838 1.76164 1.18386 1.64311 0.90518 0.88941 0.89063 0.78990 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.17 11.19 127.77 1.43 4.60 14 2 N -0.51 -23.55 3.14 -789.71 -2.48 -26.03 14 3 C -0.27 -12.73 11.56 83.82 0.97 -11.76 14 4 C 0.16 8.46 6.74 22.67 0.15 8.62 14 5 C -0.47 -23.89 9.32 23.12 0.22 -23.68 14 6 H 0.13 5.81 7.85 -2.91 -0.02 5.79 14 7 C 0.02 0.90 5.49 85.25 0.47 1.36 14 8 N -0.83 -45.71 12.08 21.84 0.26 -45.44 14 9 Si 1.01 36.10 29.57 68.60 2.03 38.13 14 10 H -0.26 -8.79 7.11 99.48 0.71 -8.08 14 11 H -0.24 -7.95 7.11 99.48 0.71 -7.24 14 12 H -0.27 -9.65 7.11 99.48 0.71 -8.94 14 13 O -0.24 -14.86 9.14 6.63 0.06 -14.80 14 14 C 0.54 30.76 9.08 129.81 1.18 31.94 14 15 O -0.60 -35.94 17.57 19.17 0.34 -35.60 14 16 H 0.08 2.50 7.70 -2.39 -0.02 2.48 14 17 H 0.09 2.41 8.14 -2.39 -0.02 2.39 14 18 H 0.09 2.40 8.14 -2.39 -0.02 2.38 14 19 H 0.19 7.37 8.06 -2.92 -0.02 7.34 14 20 H 0.29 14.49 8.30 -92.70 -0.77 13.72 14 Total: -1.00 -68.70 194.40 5.87 -62.83 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.25 Total: 9.84 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 4.41 Total: 11.08 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: -2.21 Total: -71.47 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: 0.40 Total: -50.40 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -68.70 5.87 -62.83 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261250927.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.304 kcal (2) G-P(sol) polarization free energy of solvation -68.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds