Wall clock time and date at job start Mon Mar 30 2020 02:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00290 * 2 1 4 4 H 1.48495 * 109.47506 * 240.00589 * 3 2 1 5 5 H 1.48500 * 109.46857 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46850 * 119.99953 * 3 2 1 7 7 C 1.37884 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00391 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99401 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.46742 * 180.02562 * 9 7 2 11 11 C 1.40980 * 128.03520 * 265.02026 * 10 9 7 12 12 N 1.30332 * 106.50595 * 179.70832 * 11 10 9 13 13 O 1.20908 * 111.78365 * 0.26022 * 12 11 10 14 14 C 1.34164 * 111.50214 * 0.02562 * 13 12 11 15 15 O 1.35422 * 126.86255 * 179.97438 * 14 13 12 16 16 H 0.96997 * 120.00023 * 359.97438 * 1 2 3 17 17 H 1.08996 * 109.47060 * 60.00391 * 9 7 2 18 18 H 1.08996 * 109.47146 * 300.00045 * 9 7 2 19 19 H 1.08002 * 126.74851 * 359.97438 * 11 10 9 20 20 H 0.96698 * 113.99993 * 0.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.7216 -4.3674 -1.1067 12 7 3.5459 -5.2578 -0.6308 13 8 3.6281 -5.1945 0.5738 14 6 2.8450 -4.2247 1.0699 15 8 2.6989 -3.8854 2.3728 16 1 -0.4850 0.8400 0.0004 17 1 0.6241 -2.5567 -0.8903 18 1 0.6248 -2.5571 0.8896 19 1 2.4683 -4.2110 -2.1449 20 1 3.2297 -4.4187 2.9800 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261260617.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:15 Heat of formation + Delta-G solvation = -14.344992 kcal Electronic energy + Delta-G solvation = -9354.017422 eV Core-core repulsion = 7325.455030 eV Total energy + Delta-G solvation = -2028.562392 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.77187 -38.91201 -36.12246 -34.46086 -32.13783 -29.54025 -25.66194 -24.04807 -22.07155 -20.26706 -18.87754 -18.27191 -16.83638 -16.27092 -16.06867 -14.84278 -14.59665 -14.34798 -13.97778 -13.49943 -12.76111 -12.63711 -12.05224 -11.78606 -11.74534 -11.04228 -10.57473 -9.43404 -8.17977 -6.30524 0.64711 1.39336 1.44435 1.47177 1.54175 1.68914 2.43562 3.12637 3.14739 3.48069 4.19352 4.61144 4.75413 5.18315 5.39015 5.57566 5.74679 6.18833 6.42308 6.79627 7.34712 7.37448 8.91430 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.070521 B = 0.013476 C = 0.013152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.951161 B = 2077.259598 C = 2128.513493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.104 3.896 10 C -0.221 4.221 11 C 0.025 3.975 12 N -0.385 5.385 13 O 0.060 5.940 14 C 0.156 3.844 15 O -0.408 6.408 16 H 0.266 0.734 17 H 0.016 0.984 18 H 0.004 0.996 19 H 0.211 0.789 20 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.642 -6.150 2.326 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.069 0.931 9 C 0.066 3.934 10 C -0.227 4.227 11 C -0.152 4.152 12 N -0.102 5.102 13 O -0.001 6.001 14 C 0.048 3.952 15 O -0.214 6.214 16 H 0.075 0.925 17 H 0.034 0.966 18 H 0.022 0.978 19 H 0.228 0.772 20 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 5.848 -6.538 1.700 8.935 hybrid contribution -0.066 1.134 0.549 1.262 sum 5.782 -5.404 2.249 8.228 Atomic orbital electron populations 1.70057 1.07591 1.28049 1.51253 1.25883 0.95758 1.02965 0.94581 0.85505 0.78307 0.78195 0.79066 1.19223 1.20504 1.19515 1.21361 0.92946 0.91428 1.51046 0.93097 1.17227 0.91389 0.88587 0.96188 1.20867 1.07655 1.03647 0.90489 1.24817 0.95296 0.92665 1.02399 1.73806 1.22550 1.23953 0.89939 1.84766 1.52972 1.45246 1.17140 1.22002 0.94622 0.91284 0.87294 1.85357 1.67184 1.58863 1.09987 0.92509 0.96617 0.97762 0.77185 0.71401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.47 14 2 C 0.01 0.36 5.46 84.66 0.46 0.82 14 3 Si 0.96 44.12 29.54 68.60 2.03 46.15 14 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 14 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 14 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 14 7 C -0.53 -30.35 9.09 25.60 0.23 -30.12 14 8 H 0.05 2.88 7.74 -2.92 -0.02 2.85 14 9 C 0.10 5.56 5.56 29.10 0.16 5.72 14 10 C -0.22 -9.79 5.53 -19.62 -0.11 -9.90 14 11 C 0.02 0.95 12.14 85.59 1.04 1.99 14 12 N -0.38 -14.08 12.06 -58.76 -0.71 -14.79 14 13 O 0.06 2.05 11.21 92.53 1.04 3.09 14 14 C 0.16 5.89 8.71 67.39 0.59 6.48 14 15 O -0.41 -13.13 13.63 -65.11 -0.89 -14.01 14 16 H 0.27 14.97 8.31 -92.71 -0.77 14.20 14 17 H 0.02 0.86 8.14 -2.39 -0.02 0.85 14 18 H 0.00 0.24 8.14 -2.39 -0.02 0.22 14 19 H 0.21 6.77 8.06 -2.91 -0.02 6.74 14 20 H 0.43 7.02 9.06 -74.06 -0.67 6.34 14 Total: -1.00 -67.58 197.00 4.72 -62.86 By element: Atomic # 1 Polarization: -3.41 SS G_CDS: 0.59 Total: -2.81 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 2.37 Total: -25.01 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -0.42 Total: -70.26 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.15 Total: -10.93 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -67.58 4.72 -62.86 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261260617.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.514 kcal (2) G-P(sol) polarization free energy of solvation -67.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds