Wall clock time and date at job start Mon Mar 30 2020 02:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47090 * 2 1 4 4 H 1.09005 * 109.35276 * 304.81561 * 3 2 1 5 5 C 1.52959 * 109.41900 * 64.64259 * 3 2 1 6 6 C 1.53652 * 109.32660 * 183.83333 * 5 3 2 7 7 C 1.51269 * 108.31082 * 305.14051 * 6 5 3 8 8 C 1.37885 * 120.84892 * 231.38027 * 7 6 5 9 9 N 1.31516 * 119.99913 * 180.27944 * 8 7 6 10 10 Si 1.86798 * 119.99766 * 0.28022 * 8 7 6 11 11 H 1.48506 * 109.46985 * 179.97438 * 10 8 7 12 12 H 1.48494 * 109.47276 * 299.99832 * 10 8 7 13 13 H 1.48498 * 109.47150 * 60.00043 * 10 8 7 14 14 C 1.51267 * 118.30147 * 51.65779 * 7 6 5 15 15 C 1.52964 * 109.41203 * 184.99632 * 3 2 1 16 16 H 1.09000 * 109.47207 * 300.00293 * 1 2 3 17 17 H 1.08998 * 109.46643 * 60.00448 * 1 2 3 18 18 H 1.08994 * 109.46767 * 180.02562 * 1 2 3 19 19 H 1.08999 * 109.47299 * 239.99159 * 2 1 3 20 20 H 1.09012 * 109.46830 * 119.99366 * 2 1 3 21 21 H 1.09001 * 109.47998 * 303.68929 * 5 3 2 22 22 H 1.09003 * 109.47830 * 63.71361 * 5 3 2 23 23 H 1.09007 * 109.69461 * 185.52287 * 6 5 3 24 24 H 1.09007 * 109.78671 * 64.80813 * 6 5 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 9 8 7 26 26 H 1.09001 * 109.63015 * 68.11448 * 14 7 6 27 27 H 1.09004 * 109.62839 * 188.49697 * 14 7 6 28 28 H 1.09002 * 109.47682 * 56.31268 * 15 3 2 29 29 H 1.08996 * 109.49475 * 296.28210 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9788 -0.8444 5 6 1.6271 2.1279 1.3036 6 6 2.0562 3.6026 1.2608 7 6 3.5399 3.6577 0.9712 8 6 4.3889 4.3960 1.7682 9 7 5.6754 4.4365 1.4978 10 14 3.7119 5.3386 3.2319 11 1 4.8211 6.0456 3.9213 12 1 2.7093 6.3283 2.7626 13 1 3.0674 4.3906 4.1760 14 6 4.0674 2.8872 -0.2189 15 6 3.5645 1.4427 -0.1256 16 1 -0.3633 0.5139 0.8899 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3632 -1.0276 0.0005 19 1 1.8934 -0.5140 -0.8899 20 1 1.8934 -0.5138 0.8902 21 1 0.5448 2.0685 1.4184 22 1 2.1098 1.6301 2.1447 23 1 1.8534 4.0723 2.2234 24 1 1.5101 4.1232 0.4740 25 1 6.2726 4.9562 2.0583 26 1 3.7041 3.3426 -1.1402 27 1 5.1573 2.8997 -0.2093 28 1 3.8553 0.8979 -1.0238 29 1 4.0017 0.9613 0.7491 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306409711.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:08 Heat of formation + Delta-G solvation = -40.752223 kcal Electronic energy + Delta-G solvation = -10020.263784 eV Core-core repulsion = 8327.648388 eV Total energy + Delta-G solvation = -1692.615396 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.36049 -33.39194 -30.99539 -29.56796 -27.05941 -23.28530 -21.24875 -20.43411 -18.94547 -16.03495 -14.43316 -14.05706 -13.80524 -12.90555 -12.84666 -12.32108 -12.09552 -11.86822 -11.35712 -10.89422 -10.78217 -10.64371 -10.22459 -10.10641 -9.86687 -9.61110 -9.46942 -8.67795 -8.45568 -8.38531 -6.02360 -3.91604 3.33094 3.39152 3.41117 4.44839 5.21761 5.48265 5.49879 5.66080 5.96488 6.18150 6.22442 6.30517 6.49471 6.50945 6.65100 6.72289 6.86761 6.93333 7.09360 7.15860 7.23453 7.37675 7.52140 7.74614 7.86450 7.94474 8.50108 9.06208 9.62961 11.07780 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.066608 B = 0.016082 C = 0.013702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.267578 B = 1740.613670 C = 2043.072147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.055 0.945 5 C -0.103 4.103 6 C -0.013 4.013 7 C -0.484 4.484 8 C 0.072 3.928 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.293 1.293 12 H -0.276 1.276 13 H -0.275 1.275 14 C 0.008 3.992 15 C -0.104 4.104 16 H 0.056 0.944 17 H 0.049 0.951 18 H 0.042 0.958 19 H 0.051 0.949 20 H 0.055 0.945 21 H 0.032 0.968 22 H 0.048 0.952 23 H 0.021 0.979 24 H 0.016 0.984 25 H 0.263 0.737 26 H 0.001 0.999 27 H 0.054 0.946 28 H 0.027 0.973 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.787 -5.196 -0.866 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.093 4.093 4 H 0.074 0.926 5 C -0.141 4.141 6 C -0.050 4.050 7 C -0.503 4.503 8 C -0.129 4.129 9 N -0.532 5.532 10 Si 0.719 3.281 11 H -0.219 1.219 12 H -0.201 1.201 13 H -0.201 1.201 14 C -0.029 4.029 15 C -0.142 4.142 16 H 0.075 0.925 17 H 0.068 0.932 18 H 0.062 0.938 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.601 -5.121 -0.805 8.393 hybrid contribution -0.273 0.516 0.867 1.045 sum -6.874 -4.605 0.061 8.274 Atomic orbital electron populations 1.21818 0.96886 1.00327 1.01754 1.21648 0.95002 0.98345 1.00904 1.20995 0.96861 0.93269 0.98188 0.92624 1.21707 0.97034 0.98745 0.96577 1.19727 0.96987 0.92321 0.95987 1.20085 0.90542 1.28087 1.11594 1.24856 0.94642 0.96070 0.97370 1.69835 1.02895 1.41148 1.39334 0.86661 0.78137 0.80219 0.83050 1.21931 1.20137 1.20083 1.19386 0.98659 0.90185 0.94708 1.21652 0.93949 1.00178 0.98391 0.92527 0.93204 0.93843 0.93014 0.92653 0.94912 0.93295 0.96090 0.96555 0.92683 0.98073 0.92740 0.95475 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.66 37.16 0.36 -1.77 15 2 C -0.12 -1.98 5.40 -26.73 -0.14 -2.13 15 3 C -0.07 -1.48 2.08 -90.66 -0.19 -1.67 15 4 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 5 C -0.10 -2.17 5.06 -26.41 -0.13 -2.30 15 6 C -0.01 -0.31 5.62 -27.27 -0.15 -0.46 15 7 C -0.48 -13.26 5.50 -98.92 -0.54 -13.81 15 8 C 0.07 2.05 5.46 -17.82 -0.10 1.95 15 9 N -0.89 -26.54 12.73 55.43 0.71 -25.84 15 10 Si 0.89 21.96 26.80 -169.99 -4.56 17.40 15 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 14 C 0.01 0.21 5.97 -27.49 -0.16 0.04 15 15 C -0.10 -2.30 5.22 -26.63 -0.14 -2.44 15 16 H 0.06 0.81 6.47 -51.93 -0.34 0.47 15 17 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 18 H 0.04 0.53 8.14 -51.93 -0.42 0.11 15 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.05 0.90 8.14 -51.92 -0.42 0.48 15 21 H 0.03 0.61 6.38 -51.93 -0.33 0.28 15 22 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.02 0.50 5.17 -51.92 -0.27 0.23 15 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 26 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 15 27 H 0.05 1.54 7.07 -51.93 -0.37 1.17 15 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 15 LS Contribution 225.66 15.07 3.40 3.40 Total: -1.00 -28.46 225.66 -6.32 -34.78 By element: Atomic # 1 Polarization: -2.50 SS G_CDS: -4.67 Total: -7.17 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -1.21 Total: -22.58 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.71 Total: -25.84 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.56 Total: 17.40 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.46 -6.32 -34.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306409711.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.970 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds