Wall clock time and date at job start Mon Mar 30 2020 02:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47090 * 2 1 4 4 H 1.09005 * 109.35276 * 304.81561 * 3 2 1 5 5 C 1.52959 * 109.41900 * 64.64259 * 3 2 1 6 6 C 1.53652 * 109.32660 * 183.83333 * 5 3 2 7 7 C 1.51269 * 108.31082 * 305.14051 * 6 5 3 8 8 C 1.37885 * 120.84892 * 231.38027 * 7 6 5 9 9 N 1.31516 * 119.99913 * 180.27944 * 8 7 6 10 10 Si 1.86798 * 119.99766 * 0.28022 * 8 7 6 11 11 H 1.48506 * 109.46985 * 179.97438 * 10 8 7 12 12 H 1.48494 * 109.47276 * 299.99832 * 10 8 7 13 13 H 1.48498 * 109.47150 * 60.00043 * 10 8 7 14 14 C 1.51267 * 118.30147 * 51.65779 * 7 6 5 15 15 C 1.52964 * 109.41203 * 184.99632 * 3 2 1 16 16 H 1.09000 * 109.47207 * 300.00293 * 1 2 3 17 17 H 1.08998 * 109.46643 * 60.00448 * 1 2 3 18 18 H 1.08994 * 109.46767 * 180.02562 * 1 2 3 19 19 H 1.08999 * 109.47299 * 239.99159 * 2 1 3 20 20 H 1.09012 * 109.46830 * 119.99366 * 2 1 3 21 21 H 1.09001 * 109.47998 * 303.68929 * 5 3 2 22 22 H 1.09003 * 109.47830 * 63.71361 * 5 3 2 23 23 H 1.09007 * 109.69461 * 185.52287 * 6 5 3 24 24 H 1.09007 * 109.78671 * 64.80813 * 6 5 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 9 8 7 26 26 H 1.09001 * 109.63015 * 68.11448 * 14 7 6 27 27 H 1.09004 * 109.62839 * 188.49697 * 14 7 6 28 28 H 1.09002 * 109.47682 * 56.31268 * 15 3 2 29 29 H 1.08996 * 109.49475 * 296.28210 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9788 -0.8444 5 6 1.6271 2.1279 1.3036 6 6 2.0562 3.6026 1.2608 7 6 3.5399 3.6577 0.9712 8 6 4.3889 4.3960 1.7682 9 7 5.6754 4.4365 1.4978 10 14 3.7119 5.3386 3.2319 11 1 4.8211 6.0456 3.9213 12 1 2.7093 6.3283 2.7626 13 1 3.0674 4.3906 4.1760 14 6 4.0674 2.8872 -0.2189 15 6 3.5645 1.4427 -0.1256 16 1 -0.3633 0.5139 0.8899 17 1 -0.3632 0.5138 -0.8900 18 1 -0.3632 -1.0276 0.0005 19 1 1.8934 -0.5140 -0.8899 20 1 1.8934 -0.5138 0.8902 21 1 0.5448 2.0685 1.4184 22 1 2.1098 1.6301 2.1447 23 1 1.8534 4.0723 2.2234 24 1 1.5101 4.1232 0.4740 25 1 6.2726 4.9562 2.0583 26 1 3.7041 3.3426 -1.1402 27 1 5.1573 2.8997 -0.2093 28 1 3.8553 0.8979 -1.0238 29 1 4.0017 0.9613 0.7491 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306409711.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:07 Heat of formation + Delta-G solvation = -56.767159 kcal Electronic energy + Delta-G solvation = -10020.958244 eV Core-core repulsion = 8327.648388 eV Total energy + Delta-G solvation = -1693.309855 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.07307 -35.20582 -32.76777 -31.43638 -28.78960 -24.93235 -23.12133 -22.14368 -20.61814 -18.02566 -16.42796 -15.55999 -15.38197 -14.70061 -14.56492 -14.10232 -13.76816 -13.53724 -12.97935 -12.72527 -12.51956 -12.24473 -11.88547 -11.85185 -11.56974 -11.34139 -11.24135 -10.61307 -10.46647 -10.34941 -8.16547 -6.09432 1.37869 1.38412 1.47270 2.40395 3.10103 4.09258 4.13772 4.25797 4.54207 4.73702 4.79465 4.82600 5.00092 5.04144 5.10925 5.16754 5.17770 5.28265 5.34930 5.44116 5.58381 5.63281 5.65646 5.71496 5.82528 5.95060 6.40073 6.97367 7.47682 8.95082 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.066608 B = 0.016082 C = 0.013702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.267578 B = 1740.613670 C = 2043.072147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.072 4.072 4 H 0.054 0.946 5 C -0.099 4.099 6 C -0.018 4.018 7 C -0.498 4.498 8 C 0.014 3.986 9 N -0.936 5.936 10 Si 0.946 3.054 11 H -0.293 1.293 12 H -0.267 1.267 13 H -0.265 1.265 14 C 0.002 3.998 15 C -0.097 4.097 16 H 0.054 0.946 17 H 0.053 0.947 18 H 0.065 0.935 19 H 0.063 0.937 20 H 0.055 0.945 21 H 0.064 0.936 22 H 0.039 0.961 23 H 0.023 0.977 24 H 0.020 0.980 25 H 0.262 0.738 26 H -0.004 1.004 27 H 0.019 0.981 28 H 0.046 0.954 29 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 -6.121 -0.582 10.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.091 4.091 4 H 0.073 0.927 5 C -0.137 4.137 6 C -0.056 4.056 7 C -0.517 4.517 8 C -0.183 4.183 9 N -0.577 5.577 10 Si 0.772 3.228 11 H -0.220 1.220 12 H -0.192 1.192 13 H -0.190 1.190 14 C -0.035 4.035 15 C -0.135 4.135 16 H 0.073 0.927 17 H 0.073 0.927 18 H 0.084 0.916 19 H 0.081 0.919 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.041 0.959 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.014 0.986 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.746 -6.054 -0.525 10.650 hybrid contribution 0.411 0.795 0.696 1.134 sum -8.334 -5.258 0.171 9.856 Atomic orbital electron populations 1.21788 0.94859 1.01914 1.01904 1.21569 0.96717 0.95468 1.01566 1.20958 0.94735 0.95866 0.97494 0.92715 1.21647 0.98884 0.96235 0.96890 1.19794 0.94807 0.94858 0.96119 1.20751 0.92489 1.27133 1.11362 1.25679 0.94907 0.97378 1.00324 1.69984 1.04223 1.42724 1.40767 0.85758 0.77631 0.79261 0.80134 1.21999 1.19186 1.19000 1.19390 0.96651 0.93095 0.94395 1.21534 0.96003 0.97216 0.98744 0.92675 0.92742 0.91636 0.91855 0.92605 0.91800 0.94191 0.95877 0.96172 0.92922 0.98584 0.96180 0.93542 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.66 71.98 0.70 -2.85 15 2 C -0.12 -3.37 5.40 30.60 0.17 -3.20 15 3 C -0.07 -2.68 2.08 -10.82 -0.02 -2.71 15 4 H 0.05 2.06 8.14 -2.38 -0.02 2.04 15 5 C -0.10 -3.91 5.06 30.80 0.16 -3.75 15 6 C -0.02 -0.85 5.62 30.25 0.17 -0.68 15 7 C -0.50 -27.35 5.50 -16.17 -0.09 -27.44 15 8 C 0.01 0.82 5.46 84.66 0.46 1.28 15 9 N -0.94 -57.19 12.73 21.45 0.27 -56.91 15 10 Si 0.95 44.98 26.80 68.60 1.84 46.82 15 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 15 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 13 H -0.26 -12.06 7.11 99.48 0.71 -11.35 15 14 C 0.00 0.11 5.97 30.11 0.18 0.29 15 15 C -0.10 -4.22 5.22 30.66 0.16 -4.06 15 16 H 0.05 1.34 6.47 -2.39 -0.02 1.32 15 17 H 0.05 1.26 8.14 -2.39 -0.02 1.24 15 18 H 0.06 1.31 8.14 -2.39 -0.02 1.29 15 19 H 0.06 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.06 1.63 8.14 -2.38 -0.02 1.61 15 21 H 0.06 2.14 6.38 -2.39 -0.02 2.12 15 22 H 0.04 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.02 1.05 5.17 -2.38 -0.01 1.04 15 24 H 0.02 0.91 8.14 -2.38 -0.02 0.89 15 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 15 26 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 15 27 H 0.02 1.16 7.07 -2.38 -0.02 1.14 15 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 29 H 0.03 1.57 8.14 -2.39 -0.02 1.55 15 Total: -1.00 -60.75 225.66 5.09 -55.66 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: 1.10 Total: -2.45 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 1.88 Total: -43.12 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.27 Total: -56.91 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.84 Total: 46.82 kcal Total: -60.75 5.09 -55.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306409711.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.103 kcal (2) G-P(sol) polarization free energy of solvation -60.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds