Wall clock time and date at job start Mon Mar 30 2020 02:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35217 * 126.65611 * 2 1 4 4 N 1.30758 * 108.90332 * 179.97438 * 3 2 1 5 5 C 1.34389 * 109.95268 * 359.72989 * 4 3 2 6 6 O 1.21741 * 125.90895 * 180.31718 * 5 4 3 7 7 N 1.34994 * 108.17353 * 0.43835 * 5 4 3 8 8 C 1.37006 * 126.85700 * 179.83628 * 7 5 4 9 9 H 1.07994 * 120.00052 * 210.83258 * 8 7 5 10 10 C 1.38963 * 119.99762 * 30.82783 * 8 7 5 11 11 N 1.31432 * 119.99835 * 19.36270 * 10 8 7 12 12 Si 1.86801 * 119.99974 * 199.35606 * 10 8 7 13 13 H 1.48495 * 109.47033 * 265.75197 * 12 10 8 14 14 H 1.48497 * 109.46769 * 25.75149 * 12 10 8 15 15 H 1.48493 * 109.46964 * 145.75062 * 12 10 8 16 16 H 1.09001 * 109.47287 * 270.00454 * 1 2 3 17 17 H 1.09003 * 109.47364 * 30.00529 * 1 2 3 18 18 H 1.09003 * 109.46970 * 150.00344 * 1 2 3 19 19 H 1.07996 * 125.54762 * 359.97438 * 3 2 1 20 20 H 0.97002 * 119.99850 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2723 1.0848 0.0000 4 7 3.5176 0.6861 0.0006 5 6 3.5692 -0.6568 0.0069 6 8 4.5819 -1.3324 0.0145 7 7 2.3037 -1.1268 0.0007 8 6 1.9150 -2.4406 0.0009 9 1 0.9944 -2.7314 -0.4831 10 6 2.7054 -3.3989 0.6237 11 7 3.5963 -3.0351 1.5189 12 14 2.5015 -5.2041 0.1888 13 1 1.5650 -5.8417 1.1487 14 1 1.9568 -5.3231 -1.1875 15 1 3.8206 -5.8823 0.2595 16 1 -0.3634 0.0001 1.0277 17 1 -0.3634 0.8899 -0.5139 18 1 -0.3633 -0.8900 -0.5138 19 1 1.9422 2.1130 -0.0004 20 1 4.1483 -3.7040 1.9534 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306504509.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:48 Heat of formation + Delta-G solvation = 73.197463 kcal Electronic energy + Delta-G solvation = -9775.870876 eV Core-core repulsion = 7783.397361 eV Total energy + Delta-G solvation = -1992.473515 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.059 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.56348 -35.36955 -33.69745 -32.01364 -30.56845 -26.01993 -24.98571 -21.09992 -20.37683 -17.62249 -15.86332 -15.21328 -14.72256 -14.27172 -13.91500 -13.03390 -12.93059 -12.25891 -11.65926 -11.13958 -11.05651 -10.47359 -10.44335 -9.71267 -9.39763 -8.57789 -7.89252 -6.90691 -6.38101 -4.15197 2.76775 2.86788 3.14893 3.24084 3.29035 4.12702 4.90210 5.15064 5.35356 5.39176 5.65321 5.74678 5.90026 6.69287 7.08030 7.44483 7.77418 8.24692 8.80530 9.26824 9.69944 10.40283 10.61319 Molecular weight = 169.06amu Principal moments of inertia in cm(-1) A = 0.062882 B = 0.021104 C = 0.016787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.172085 B = 1326.457998 C = 1667.590950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.427 5.427 3 C 0.284 3.716 4 N -0.592 5.592 5 C 0.591 3.409 6 O -0.551 6.551 7 N -0.264 5.264 8 C -0.326 4.326 9 H 0.095 0.905 10 C 0.051 3.949 11 N -0.784 5.784 12 Si 0.942 3.058 13 H -0.276 1.276 14 H -0.266 1.266 15 H -0.276 1.276 16 H 0.060 0.940 17 H 0.077 0.923 18 H 0.077 0.923 19 H 0.202 0.798 20 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 3.145 -1.782 9.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.225 5.225 3 C -0.009 4.009 4 N -0.344 5.344 5 C 0.290 3.710 6 O -0.425 6.425 7 N -0.076 5.076 8 C -0.458 4.458 9 H 0.112 0.888 10 C -0.166 4.166 11 N -0.414 5.414 12 Si 0.766 3.234 13 H -0.202 1.202 14 H -0.190 1.190 15 H -0.201 1.201 16 H 0.079 0.921 17 H 0.096 0.904 18 H 0.096 0.904 19 H 0.218 0.782 20 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.829 2.799 -1.637 8.474 hybrid contribution -1.016 -1.116 0.057 1.510 sum -8.846 1.683 -1.580 9.142 Atomic orbital electron populations 1.21625 0.76576 1.03183 1.02131 1.48734 1.04178 1.02911 1.66702 1.24905 0.86751 0.92441 0.96822 1.71476 1.18221 1.13441 1.31236 1.17505 0.82277 0.84999 0.86202 1.90757 1.30519 1.62166 1.59017 1.45925 1.01939 0.97529 1.62161 1.19348 1.13154 0.76995 1.36272 0.88777 1.25577 0.96291 1.00943 0.93834 1.70030 1.17243 1.35654 1.18440 0.85729 0.78187 0.80382 0.79079 1.20170 1.18978 1.20085 0.92137 0.90403 0.90396 0.78201 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.56 11.11 59.85 0.66 2.22 14 2 N -0.43 -9.14 4.05 -69.25 -0.28 -9.42 14 3 C 0.28 5.74 12.63 -90.00 -1.14 4.61 14 4 N -0.59 -15.78 11.22 -17.70 -0.20 -15.98 14 5 C 0.59 18.39 8.29 -87.07 -0.72 17.67 14 6 O -0.55 -19.33 15.44 5.15 0.08 -19.25 14 7 N -0.26 -7.42 3.65 -15.37 -0.06 -7.47 14 8 C -0.33 -9.08 9.78 -14.97 -0.15 -9.22 14 9 H 0.09 2.35 7.54 -52.49 -0.40 1.96 14 10 C 0.05 1.43 4.94 -17.45 -0.09 1.34 14 11 N -0.78 -24.10 11.13 55.50 0.62 -23.48 14 12 Si 0.94 21.00 29.60 -169.99 -5.03 15.97 14 13 H -0.28 -5.79 7.11 56.52 0.40 -5.39 14 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 14 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 14 16 H 0.06 0.82 8.14 -51.93 -0.42 0.39 14 17 H 0.08 0.78 8.14 -51.93 -0.42 0.36 14 18 H 0.08 1.15 7.63 -51.93 -0.40 0.75 14 19 H 0.20 2.61 8.06 -52.49 -0.42 2.19 14 20 H 0.28 7.89 8.31 -40.82 -0.34 7.55 14 LS Contribution 190.99 15.07 2.88 2.88 Total: -1.00 -38.84 190.99 -4.61 -43.45 By element: Atomic # 1 Polarization: -2.12 SS G_CDS: -1.19 Total: -3.32 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: -1.43 Total: 16.62 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.08 Total: -56.35 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.08 Total: -19.25 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 2.88 Total: 2.88 kcal Total: -38.84 -4.61 -43.45 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306504509.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.646 kcal (2) G-P(sol) polarization free energy of solvation -38.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds