Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47198 * 2 1 4 4 H 1.09005 * 115.55489 * 29.31423 * 3 2 1 5 5 C 1.52995 * 117.50099 * 243.62857 * 3 2 1 6 6 C 1.52996 * 117.49944 * 174.99935 * 3 2 1 7 7 H 1.08996 * 117.52124 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.49791 * 214.98011 * 6 3 2 9 9 O 1.21439 * 120.00090 * 334.99104 * 8 6 3 10 10 C 1.41025 * 119.99961 * 154.98981 * 8 6 3 11 11 H 1.07999 * 120.00145 * 6.42511 * 10 8 6 12 12 C 1.40455 * 119.99941 * 186.42423 * 10 8 6 13 13 N 1.30519 * 120.00107 * 184.88216 * 12 10 8 14 14 Si 1.86798 * 120.00196 * 4.87933 * 12 10 8 15 15 H 1.48502 * 109.47305 * 180.02562 * 14 12 10 16 16 H 1.48505 * 109.47159 * 300.00342 * 14 12 10 17 17 H 1.48492 * 109.47060 * 60.00042 * 14 12 10 18 18 H 1.09005 * 109.46641 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46889 * 299.99261 * 1 2 3 20 20 H 1.08996 * 109.47413 * 60.00047 * 1 2 3 21 21 H 1.09006 * 109.47354 * 240.00319 * 2 1 3 22 22 H 1.08998 * 109.47474 * 120.00498 * 2 1 3 23 23 H 1.09005 * 117.50012 * 145.01999 * 5 3 2 24 24 H 1.09000 * 117.51766 * 359.97438 * 5 3 2 25 25 H 0.97005 * 119.99630 * 354.91218 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1717 0.4815 5 6 2.8438 1.9077 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1806 0.7722 0.1957 8 6 4.0228 2.8621 0.8915 9 8 3.3030 3.8340 1.0013 10 6 5.3009 2.8601 1.4875 11 1 5.9809 2.0413 1.3044 12 6 5.6894 3.9231 2.3193 13 7 6.9043 3.9698 2.7941 14 14 4.4676 5.2701 2.7460 15 1 5.1200 6.2680 3.6313 16 1 4.0115 5.9375 1.5002 17 1 3.3000 4.6759 3.4450 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 2.7211 2.9429 -1.5343 24 1 3.0099 1.1861 -2.0158 25 1 7.5162 3.2344 2.6338 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306827933.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = -54.955137 kcal Electronic energy + Delta-G solvation = -9384.362205 eV Core-core repulsion = 7555.297830 eV Total energy + Delta-G solvation = -1829.064375 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.32542 -35.76296 -33.06223 -31.56033 -27.27068 -23.69013 -22.69537 -20.04113 -18.82214 -17.43362 -15.11207 -14.53888 -14.19970 -13.79650 -13.06781 -12.77126 -12.45543 -11.90647 -11.78449 -11.31537 -10.88051 -10.61757 -10.43116 -10.22772 -9.50281 -9.30310 -9.20358 -9.06124 -7.75177 -6.97135 -5.18908 3.32220 3.64144 3.93515 4.04569 4.48533 4.59323 5.07706 5.26149 5.42216 5.48536 5.73568 5.78814 5.94307 6.11081 6.15805 6.26598 6.39572 6.40366 6.52635 6.79585 6.93650 7.57508 7.87410 8.35856 8.64534 9.92268 10.09962 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.074491 B = 0.013266 C = 0.012425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.794293 B = 2110.084958 C = 2252.976793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.140 4.140 4 H 0.107 0.893 5 C -0.163 4.163 6 C -0.174 4.174 7 H 0.098 0.902 8 C 0.379 3.621 9 O -0.589 6.589 10 C -0.573 4.573 11 H 0.071 0.929 12 C 0.053 3.947 13 N -0.806 5.806 14 Si 1.135 2.865 15 H -0.324 1.324 16 H -0.280 1.280 17 H -0.288 1.288 18 H 0.049 0.951 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 -5.746 -3.978 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.158 4.158 4 H 0.125 0.875 5 C -0.201 4.201 6 C -0.193 4.193 7 H 0.116 0.884 8 C 0.283 3.717 9 O -0.490 6.490 10 C -0.603 4.603 11 H 0.089 0.911 12 C -0.167 4.167 13 N -0.432 5.432 14 Si 0.968 3.032 15 H -0.256 1.256 16 H -0.207 1.207 17 H -0.216 1.216 18 H 0.068 0.932 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.111 0.889 24 H 0.102 0.898 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.436 -4.017 -3.194 9.035 hybrid contribution 0.575 -1.949 -0.947 2.242 sum -6.861 -5.965 -4.141 9.991 Atomic orbital electron populations 1.21731 0.95897 1.00846 1.01913 1.21113 0.95539 0.94882 1.01420 1.22293 0.93979 0.97010 1.02551 0.87452 1.22891 1.04641 1.01867 0.90657 1.22946 0.94150 1.02051 1.00193 0.88425 1.19057 0.87656 0.84915 0.80053 1.89872 1.59450 1.35677 1.63972 1.21887 1.01692 1.08646 1.28090 0.91084 1.27685 0.98064 1.00796 0.90192 1.70567 1.04750 1.31745 1.36173 0.82241 0.71725 0.73289 0.75966 1.25614 1.20704 1.21579 0.93227 0.92665 0.92799 0.92381 0.91939 0.88916 0.89751 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.87 37.16 0.37 -1.50 15 2 C -0.09 -1.39 6.22 -26.73 -0.17 -1.55 15 3 C -0.14 -2.67 5.25 -90.62 -0.48 -3.14 15 4 H 0.11 2.22 7.82 -51.93 -0.41 1.81 15 5 C -0.16 -3.12 9.79 -26.73 -0.26 -3.38 15 6 C -0.17 -3.87 5.78 -91.77 -0.53 -4.40 15 7 H 0.10 2.05 8.14 -51.93 -0.42 1.63 15 8 C 0.38 10.39 6.50 -33.25 -0.22 10.17 15 9 O -0.59 -17.20 11.98 5.42 0.06 -17.14 15 10 C -0.57 -16.47 9.66 -37.69 -0.36 -16.83 15 11 H 0.07 2.01 8.06 -52.49 -0.42 1.59 15 12 C 0.05 1.54 5.52 -17.27 -0.10 1.45 15 13 N -0.81 -23.02 13.64 55.57 0.76 -22.26 15 14 Si 1.14 29.99 25.97 -169.99 -4.42 25.57 15 15 H -0.32 -8.17 7.11 56.52 0.40 -7.77 15 16 H -0.28 -7.62 6.77 56.52 0.38 -7.23 15 17 H -0.29 -7.61 7.11 56.52 0.40 -7.21 15 18 H 0.05 0.54 8.14 -51.93 -0.42 0.11 15 19 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.06 0.80 7.88 -51.93 -0.41 0.39 15 22 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.09 1.87 8.14 -51.93 -0.42 1.45 15 24 H 0.08 1.36 8.03 -51.93 -0.42 0.95 15 25 H 0.28 7.67 8.72 -40.82 -0.36 7.31 15 LS Contribution 220.52 15.07 3.32 3.32 Total: -1.00 -30.26 220.52 -5.37 -35.63 By element: Atomic # 1 Polarization: -2.57 SS G_CDS: -3.36 Total: -5.93 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -1.74 Total: -19.20 kcal Atomic # 7 Polarization: -23.02 SS G_CDS: 0.76 Total: -22.26 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.06 Total: -17.14 kcal Atomic # 14 Polarization: 29.99 SS G_CDS: -4.42 Total: 25.57 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.26 -5.37 -35.63 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827933.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.325 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds