Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47198 * 2 1 4 4 H 1.09005 * 115.55489 * 29.31423 * 3 2 1 5 5 C 1.52995 * 117.50099 * 243.62857 * 3 2 1 6 6 C 1.52996 * 117.49944 * 174.99935 * 3 2 1 7 7 H 1.08996 * 117.52124 * 0.02562 * 6 3 2 8 8 C 1.50703 * 117.49791 * 214.98011 * 6 3 2 9 9 O 1.21439 * 120.00090 * 334.99104 * 8 6 3 10 10 C 1.41025 * 119.99961 * 154.98981 * 8 6 3 11 11 H 1.07999 * 120.00145 * 6.42511 * 10 8 6 12 12 C 1.40455 * 119.99941 * 186.42423 * 10 8 6 13 13 N 1.30519 * 120.00107 * 184.88216 * 12 10 8 14 14 Si 1.86798 * 120.00196 * 4.87933 * 12 10 8 15 15 H 1.48502 * 109.47305 * 180.02562 * 14 12 10 16 16 H 1.48505 * 109.47159 * 300.00342 * 14 12 10 17 17 H 1.48492 * 109.47060 * 60.00042 * 14 12 10 18 18 H 1.09005 * 109.46641 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46889 * 299.99261 * 1 2 3 20 20 H 1.08996 * 109.47413 * 60.00047 * 1 2 3 21 21 H 1.09006 * 109.47354 * 240.00319 * 2 1 3 22 22 H 1.08998 * 109.47474 * 120.00498 * 2 1 3 23 23 H 1.09005 * 117.50012 * 145.01999 * 5 3 2 24 24 H 1.09000 * 117.51766 * 359.97438 * 5 3 2 25 25 H 0.97005 * 119.99630 * 354.91218 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1717 0.4815 5 6 2.8438 1.9077 -1.2158 6 6 3.5501 1.6579 0.1183 7 1 4.1806 0.7722 0.1957 8 6 4.0228 2.8621 0.8915 9 8 3.3030 3.8340 1.0013 10 6 5.3009 2.8601 1.4875 11 1 5.9809 2.0413 1.3044 12 6 5.6894 3.9231 2.3193 13 7 6.9043 3.9698 2.7941 14 14 4.4676 5.2701 2.7460 15 1 5.1200 6.2680 3.6313 16 1 4.0115 5.9375 1.5002 17 1 3.3000 4.6759 3.4450 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 2.7211 2.9429 -1.5343 24 1 3.0099 1.1861 -2.0158 25 1 7.5162 3.2344 2.6338 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306827933.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = -73.528660 kcal Electronic energy + Delta-G solvation = -9385.167613 eV Core-core repulsion = 7555.297830 eV Total energy + Delta-G solvation = -1829.869783 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.21547 -37.56696 -35.27659 -32.81566 -29.41636 -25.10173 -24.39287 -21.53228 -20.77220 -19.53346 -17.06295 -16.39958 -15.81492 -15.31207 -14.93819 -14.71264 -14.40106 -13.30462 -13.15056 -12.91926 -12.61955 -12.32447 -12.13238 -11.89848 -11.50106 -11.32473 -10.98674 -10.77347 -9.95718 -9.14870 -7.44636 1.18521 1.49380 1.86785 1.93264 2.36500 2.76055 3.34238 3.65472 3.99185 4.16572 4.29565 4.51321 4.57012 4.64732 4.79872 4.92361 5.10932 5.15301 5.27950 5.30038 5.33984 5.52212 5.63559 6.19299 6.42782 7.74799 7.87051 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.074491 B = 0.013266 C = 0.012425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.794293 B = 2110.084958 C = 2252.976793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.145 4.145 6 C -0.205 4.205 7 H 0.109 0.891 8 C 0.370 3.630 9 O -0.612 6.612 10 C -0.598 4.598 11 H 0.065 0.935 12 C 0.024 3.976 13 N -0.816 5.816 14 Si 1.165 2.835 15 H -0.304 1.304 16 H -0.295 1.295 17 H -0.292 1.292 18 H 0.073 0.927 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.078 0.922 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.123 0.877 25 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.084 -6.848 -4.763 11.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C -0.143 4.143 4 H 0.104 0.896 5 C -0.182 4.182 6 C -0.224 4.224 7 H 0.127 0.873 8 C 0.275 3.725 9 O -0.513 6.513 10 C -0.629 4.629 11 H 0.084 0.916 12 C -0.194 4.194 13 N -0.442 5.442 14 Si 0.996 3.004 15 H -0.235 1.235 16 H -0.224 1.224 17 H -0.219 1.219 18 H 0.092 0.908 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.097 0.903 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.141 0.859 25 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.467 -5.127 -3.968 10.664 hybrid contribution 0.902 -1.623 -0.732 1.996 sum -7.565 -6.749 -4.700 11.174 Atomic orbital electron populations 1.21718 0.94114 1.02465 1.01859 1.21149 0.97035 0.91857 1.02477 1.22421 0.91189 0.99223 1.01496 0.89577 1.23011 1.02410 1.02218 0.90532 1.22713 0.96768 1.00331 1.02601 0.87288 1.19529 0.86978 0.86174 0.79781 1.89851 1.59820 1.36995 1.64659 1.22123 1.02796 1.08847 1.29154 0.91634 1.28343 0.98749 1.01993 0.90336 1.70562 1.04884 1.32088 1.36635 0.81858 0.70704 0.72469 0.75385 1.23469 1.22360 1.21940 0.90777 0.93421 0.92264 0.90298 0.91916 0.90389 0.85866 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.87 71.98 0.71 -2.48 15 2 C -0.09 -2.34 6.22 30.59 0.19 -2.15 15 3 C -0.12 -4.50 5.25 -10.79 -0.06 -4.56 15 4 H 0.09 3.48 7.82 -2.38 -0.02 3.46 15 5 C -0.14 -5.16 9.79 30.60 0.30 -4.86 15 6 C -0.21 -8.85 5.78 -11.54 -0.07 -8.92 15 7 H 0.11 4.40 8.14 -2.39 -0.02 4.39 15 8 C 0.37 20.31 6.50 26.37 0.17 20.48 15 9 O -0.61 -35.84 11.98 -3.52 -0.04 -35.89 15 10 C -0.60 -34.72 9.66 23.49 0.23 -34.49 15 11 H 0.07 3.77 8.06 -2.91 -0.02 3.74 15 12 C 0.02 1.40 5.52 85.43 0.47 1.87 15 13 N -0.82 -46.49 13.64 21.91 0.30 -46.19 15 14 Si 1.17 60.89 25.97 68.60 1.78 62.67 15 15 H -0.30 -14.72 7.11 99.48 0.71 -14.02 15 16 H -0.30 -16.08 6.77 99.48 0.67 -15.40 15 17 H -0.29 -15.25 7.11 99.48 0.71 -14.55 15 18 H 0.07 1.30 8.14 -2.38 -0.02 1.28 15 19 H 0.05 1.12 8.14 -2.39 -0.02 1.10 15 20 H 0.06 1.25 8.14 -2.39 -0.02 1.23 15 21 H 0.08 1.81 7.88 -2.38 -0.02 1.79 15 22 H 0.06 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.08 3.02 8.14 -2.38 -0.02 3.00 15 24 H 0.12 3.44 8.03 -2.39 -0.02 3.42 15 25 H 0.28 15.53 8.72 -92.70 -0.81 14.72 15 Total: -1.00 -63.76 220.52 5.07 -58.70 By element: Atomic # 1 Polarization: -5.25 SS G_CDS: 1.08 Total: -4.16 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 1.95 Total: -35.13 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.30 Total: -46.19 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.04 Total: -35.89 kcal Atomic # 14 Polarization: 60.89 SS G_CDS: 1.78 Total: 62.67 kcal Total: -63.76 5.07 -58.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306827933.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.833 kcal (2) G-P(sol) polarization free energy of solvation -63.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds