Wall clock time and date at job start Mon Mar 30 2020 02:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 115.55128 * 2 1 4 4 O 1.21293 * 120.00471 * 214.41651 * 3 2 1 5 5 N 1.34777 * 119.99768 * 34.41591 * 3 2 1 6 6 C 1.37106 * 119.99958 * 179.97438 * 5 3 2 7 7 H 1.07992 * 120.00328 * 0.02562 * 6 5 3 8 8 C 1.38947 * 119.99689 * 179.97438 * 6 5 3 9 9 N 1.31414 * 120.00367 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 119.99822 * 180.27886 * 8 6 5 11 11 H 1.48497 * 109.47322 * 179.73003 * 10 8 6 12 12 H 1.48506 * 109.47056 * 299.72747 * 10 8 6 13 13 H 1.48501 * 109.47099 * 59.72776 * 10 8 6 14 14 C 1.52994 * 117.49996 * 145.67164 * 2 1 3 15 15 C 1.53005 * 117.49796 * 214.33452 * 2 1 3 16 16 H 1.09001 * 109.47381 * 85.58268 * 1 2 3 17 17 H 1.09000 * 109.47243 * 205.57847 * 1 2 3 18 18 H 1.08998 * 109.47505 * 325.58188 * 1 2 3 19 19 H 0.97000 * 120.00327 * 0.02562 * 5 3 2 20 20 H 0.97005 * 120.00032 * 179.97438 * 9 8 6 21 21 H 1.09002 * 117.50530 * 215.00191 * 14 2 1 22 22 H 1.09004 * 117.49838 * 0.02562 * 14 2 1 23 23 H 1.08996 * 117.49890 * 359.97046 * 15 2 1 24 24 H 1.08998 * 117.49622 * 145.00091 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 8 3.2233 1.5331 -0.5937 5 7 1.6018 2.3829 0.6597 6 6 2.1934 3.6197 0.6602 7 1 3.1224 3.7742 0.1316 8 6 1.5971 4.6747 1.3399 9 7 0.4664 4.4870 1.9827 10 14 2.3991 6.3619 1.3340 11 1 1.5675 7.3080 2.1204 12 1 3.7514 6.2692 1.9409 13 1 2.5162 6.8495 -0.0637 14 6 2.2364 -1.1207 0.7653 15 6 2.2364 -1.1207 -0.7655 16 1 -0.3634 0.0792 -1.0246 17 1 -0.3634 -0.9269 0.4437 18 1 -0.3634 0.8477 0.5808 19 1 0.7676 2.2441 1.1348 20 1 0.0503 5.2235 2.4575 21 1 3.1713 -0.8747 1.2689 22 1 1.6111 -1.8583 1.2685 23 1 1.6112 -1.8582 -1.2686 24 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307481232.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:25 Heat of formation + Delta-G solvation = -23.543287 kcal Electronic energy + Delta-G solvation = -9599.164162 eV Core-core repulsion = 7706.035996 eV Total energy + Delta-G solvation = -1893.128166 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.85889 -35.85243 -33.87500 -31.23915 -28.16792 -25.17494 -22.05018 -21.96199 -18.34245 -17.73204 -15.98480 -14.78341 -14.24663 -13.89224 -13.40904 -13.00197 -12.50124 -11.98855 -11.58767 -11.44483 -11.09684 -10.98421 -10.41775 -10.25787 -9.95980 -9.55324 -9.33791 -8.34189 -7.95331 -6.40741 -3.81171 3.19784 3.26399 3.31099 3.68702 4.17720 4.47628 4.88286 5.20378 5.26915 5.40576 5.57581 5.95319 6.00039 6.08075 6.23232 6.35196 6.41612 6.61626 6.75146 7.55868 8.07963 8.63080 9.18518 9.57650 10.09535 10.77023 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.084259 B = 0.013022 C = 0.011873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.229439 B = 2149.640707 C = 2357.684105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.146 4.146 3 C 0.474 3.526 4 O -0.597 6.597 5 N -0.555 5.555 6 C -0.303 4.303 7 H 0.102 0.898 8 C 0.023 3.977 9 N -0.901 5.901 10 Si 0.932 3.068 11 H -0.284 1.284 12 H -0.273 1.273 13 H -0.273 1.273 14 C -0.160 4.160 15 C -0.153 4.153 16 H 0.059 0.941 17 H 0.056 0.944 18 H 0.067 0.933 19 H 0.394 0.606 20 H 0.272 0.728 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.650 -6.559 -0.712 6.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.150 4.150 3 C 0.260 3.740 4 O -0.483 6.483 5 N -0.191 5.191 6 C -0.432 4.432 7 H 0.120 0.880 8 C -0.179 4.179 9 N -0.542 5.542 10 Si 0.759 3.241 11 H -0.209 1.209 12 H -0.199 1.199 13 H -0.199 1.199 14 C -0.198 4.198 15 C -0.191 4.191 16 H 0.078 0.922 17 H 0.075 0.925 18 H 0.086 0.914 19 H 0.229 0.771 20 H 0.082 0.918 21 H 0.112 0.888 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.090 -6.267 -0.984 6.437 hybrid contribution -0.206 0.807 0.372 0.912 sum -1.296 -5.460 -0.612 5.645 Atomic orbital electron populations 1.21344 0.91661 1.02033 1.02049 1.21474 0.95044 0.91177 1.07255 1.18873 0.86473 0.84535 0.84153 1.90492 1.25145 1.83943 1.48738 1.41844 1.23524 1.08430 1.45272 1.19706 1.07541 0.85216 1.30741 0.87970 1.25273 0.96050 1.00139 0.96388 1.69611 1.17489 1.33601 1.33485 0.85904 0.78835 0.80938 0.78454 1.20925 1.19882 1.19861 1.22999 1.02335 0.99724 0.94749 1.22892 1.02815 0.99291 0.94063 0.92193 0.92517 0.91443 0.77139 0.91766 0.88796 0.88839 0.89041 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.79 37.15 0.36 -1.50 14 2 C -0.15 -2.83 2.61 -155.66 -0.41 -3.24 14 3 C 0.47 12.00 7.34 -10.99 -0.08 11.92 14 4 O -0.60 -17.17 15.83 5.55 0.09 -17.09 14 5 N -0.56 -14.80 5.18 -10.96 -0.06 -14.86 14 6 C -0.30 -8.71 9.68 -14.93 -0.14 -8.86 14 7 H 0.10 3.06 7.16 -52.49 -0.38 2.69 14 8 C 0.02 0.64 5.50 -17.47 -0.10 0.54 14 9 N -0.90 -24.92 13.05 55.50 0.72 -24.20 14 10 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 14 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 14 12 H -0.27 -6.22 7.11 56.52 0.40 -5.81 14 13 H -0.27 -6.21 7.11 56.52 0.40 -5.81 14 14 C -0.16 -2.65 9.88 -26.69 -0.26 -2.92 14 15 C -0.15 -2.58 9.77 -26.69 -0.26 -2.84 14 16 H 0.06 0.93 8.14 -51.93 -0.42 0.50 14 17 H 0.06 0.76 7.90 -51.93 -0.41 0.35 14 18 H 0.07 1.18 6.39 -51.93 -0.33 0.85 14 19 H 0.39 10.03 6.20 -40.82 -0.25 9.78 14 20 H 0.27 7.11 8.31 -40.82 -0.34 6.77 14 21 H 0.09 1.65 8.14 -51.93 -0.42 1.22 14 22 H 0.09 1.27 8.05 -51.93 -0.42 0.85 14 23 H 0.09 1.26 8.14 -51.93 -0.42 0.84 14 24 H 0.10 1.89 7.67 -51.93 -0.40 1.49 14 LS Contribution 215.61 15.07 3.25 3.25 Total: -1.00 -31.16 215.61 -4.50 -35.66 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -2.59 Total: 7.80 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.89 Total: -6.89 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.67 Total: -39.06 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.09 Total: -17.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -31.16 -4.50 -35.66 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307481232.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.115 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds