Wall clock time and date at job start Mon Mar 30 2020 01:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 115.54996 * 2 1 4 4 C 1.50701 * 109.46822 * 279.63692 * 3 2 1 5 5 O 1.21437 * 120.00000 * 5.20816 * 4 3 2 6 6 C 1.41029 * 119.99864 * 185.21699 * 4 3 2 7 7 H 1.07997 * 119.99806 * 359.97438 * 6 4 3 8 8 C 1.40464 * 119.99826 * 180.02562 * 6 4 3 9 9 N 1.30514 * 120.00022 * 359.97438 * 8 6 4 10 10 Si 1.86799 * 119.99802 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47030 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47482 * 119.99897 * 10 8 6 13 13 H 1.48499 * 109.46998 * 240.00006 * 10 8 6 14 14 C 1.52997 * 117.51974 * 145.69645 * 2 1 3 15 15 C 1.52996 * 117.50041 * 214.32764 * 2 1 3 16 16 H 1.09001 * 109.47028 * 64.99914 * 1 2 3 17 17 H 1.09000 * 109.46605 * 185.00623 * 1 2 3 18 18 H 1.08999 * 109.46825 * 305.00133 * 1 2 3 19 19 H 1.08997 * 109.47046 * 159.63710 * 3 2 1 20 20 H 1.08994 * 109.47093 * 39.63319 * 3 2 1 21 21 H 0.97004 * 120.00259 * 180.02562 * 9 8 6 22 22 H 1.09001 * 117.50368 * 214.96985 * 14 2 1 23 23 H 1.08999 * 117.49861 * 359.97438 * 14 2 1 24 24 H 1.09001 * 117.49915 * 359.97438 * 15 2 1 25 25 H 1.09005 * 117.49965 * 144.99475 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1920 1.9362 -1.4008 5 8 1.6293 1.3350 -2.2933 6 6 2.8475 3.1543 -1.6752 7 1 3.3477 3.6891 -0.8813 8 6 2.8489 3.6726 -2.9807 9 7 2.2440 3.0265 -3.9399 10 14 3.7166 5.2864 -3.3439 11 1 4.3198 5.8162 -2.0947 12 1 4.7835 5.0591 -4.3516 13 1 2.7359 6.2673 -3.8742 14 6 2.2369 -1.1208 0.7647 15 6 2.2365 -1.1207 -0.7653 16 1 -0.3633 0.4343 -0.9314 17 1 -0.3632 -1.0238 0.0897 18 1 -0.3633 0.5895 0.8418 19 1 3.2158 1.2927 0.3576 20 1 1.6326 2.0495 0.6555 21 1 2.2453 3.3842 -4.8416 22 1 3.1721 -0.8749 1.2677 23 1 1.6120 -1.8583 1.2684 24 1 1.6113 -1.8583 -1.2685 25 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307541652.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:05 Heat of formation + Delta-G solvation = -32.263957 kcal Electronic energy + Delta-G solvation = -9565.059280 eV Core-core repulsion = 7736.978868 eV Total energy + Delta-G solvation = -1828.080411 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.97281 -35.67489 -32.50132 -28.87214 -27.68710 -25.75211 -21.72112 -20.10015 -17.81981 -16.11610 -15.08483 -14.64063 -13.83414 -13.47227 -12.57160 -12.45965 -12.05091 -11.60321 -11.35403 -11.16848 -10.83441 -10.51979 -10.29689 -10.16306 -9.94985 -9.40704 -8.89921 -8.83222 -7.22290 -6.12263 -4.79692 3.07463 3.17570 3.22324 4.08624 4.34736 4.55400 5.42754 5.48348 5.64406 5.70238 5.95401 6.18256 6.34818 6.42617 6.61594 6.73599 6.76113 6.85153 6.92589 7.01919 7.17102 7.33929 8.17819 8.92600 9.01982 10.45045 10.71000 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.090797 B = 0.012979 C = 0.012550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.305503 B = 2156.801533 C = 2230.492629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.093 4.093 3 C -0.127 4.127 4 C 0.367 3.633 5 O -0.534 6.534 6 C -0.542 4.542 7 H 0.066 0.934 8 C 0.084 3.916 9 N -0.743 5.743 10 Si 0.901 3.099 11 H -0.262 1.262 12 H -0.275 1.275 13 H -0.275 1.275 14 C -0.200 4.200 15 C -0.153 4.153 16 H 0.070 0.930 17 H 0.042 0.958 18 H 0.047 0.953 19 H 0.061 0.939 20 H 0.065 0.935 21 H 0.270 0.730 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -2.019 5.289 5.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.093 4.093 3 C -0.165 4.165 4 C 0.260 3.740 5 O -0.422 6.422 6 C -0.574 4.574 7 H 0.084 0.916 8 C -0.138 4.138 9 N -0.373 5.373 10 Si 0.726 3.274 11 H -0.186 1.186 12 H -0.200 1.200 13 H -0.200 1.200 14 C -0.237 4.237 15 C -0.190 4.190 16 H 0.089 0.911 17 H 0.061 0.939 18 H 0.066 0.934 19 H 0.079 0.921 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.103 0.897 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.052 -2.366 4.705 5.267 hybrid contribution 0.589 0.888 -0.024 1.066 sum 0.640 -1.478 4.681 4.950 Atomic orbital electron populations 1.21235 0.92972 1.00052 1.02102 1.21145 0.94269 0.91217 1.02626 1.21712 0.98824 0.93345 1.02612 1.19437 0.81521 0.86519 0.86515 1.90383 1.43910 1.60977 1.46932 1.20864 1.33971 1.07941 0.94622 0.91564 1.25988 0.93821 0.97883 0.96146 1.69967 1.30773 1.35461 1.01054 0.86417 0.79671 0.82153 0.79207 1.18559 1.20004 1.19995 1.23150 1.02310 1.02891 0.95313 1.22696 1.02629 1.01450 0.92248 0.91100 0.93926 0.93385 0.92071 0.91684 0.91896 0.89717 0.89989 0.89876 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 9.66 37.16 0.36 -1.68 15 2 C -0.09 -1.91 1.59 -154.51 -0.25 -2.16 15 3 C -0.13 -2.89 5.51 -27.88 -0.15 -3.05 15 4 C 0.37 10.35 6.76 -33.25 -0.22 10.13 15 5 O -0.53 -16.67 13.48 5.42 0.07 -16.60 15 6 C -0.54 -15.37 9.22 -37.69 -0.35 -15.71 15 7 H 0.07 1.75 7.85 -52.49 -0.41 1.34 15 8 C 0.08 2.32 5.50 -17.27 -0.10 2.23 15 9 N -0.74 -21.87 11.72 55.57 0.65 -21.21 15 10 Si 0.90 19.87 29.56 -169.99 -5.03 14.84 15 11 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 13 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 14 C -0.20 -3.45 9.87 -26.73 -0.26 -3.72 15 15 C -0.15 -3.08 9.18 -26.73 -0.25 -3.33 15 16 H 0.07 1.55 7.61 -51.93 -0.40 1.15 15 17 H 0.04 0.71 8.09 -51.93 -0.42 0.29 15 18 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 19 H 0.06 1.32 7.94 -51.93 -0.41 0.90 15 20 H 0.06 1.39 8.13 -51.93 -0.42 0.97 15 21 H 0.27 7.14 8.29 -40.82 -0.34 6.80 15 22 H 0.08 1.38 8.08 -51.93 -0.42 0.96 15 23 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.08 1.59 8.14 -51.93 -0.42 1.16 15 25 H 0.09 1.92 8.14 -51.93 -0.42 1.50 15 LS Contribution 221.94 15.07 3.34 3.34 Total: -1.00 -31.37 221.94 -5.48 -36.85 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.31 Total: 0.07 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -1.22 Total: -17.29 kcal Atomic # 7 Polarization: -21.87 SS G_CDS: 0.65 Total: -21.21 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.07 Total: -16.60 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -31.37 -5.48 -36.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307541652.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.590 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds