Wall clock time and date at job start Mon Mar 30 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46608 * 2 1 4 4 C 1.52996 * 109.46840 * 119.99926 * 2 1 3 5 5 C 1.50702 * 109.47159 * 299.99938 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.52994 * 109.47035 * 239.99696 * 2 1 3 14 14 C 1.53008 * 117.49261 * 128.74779 * 13 2 1 15 15 C 1.53005 * 117.49711 * 60.09159 * 13 2 1 16 16 H 1.08994 * 109.47333 * 300.00159 * 1 2 3 17 17 H 1.09001 * 109.46866 * 60.00026 * 1 2 3 18 18 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 19 19 H 1.09004 * 109.46610 * 179.97438 * 3 2 1 20 20 H 1.09001 * 109.47486 * 299.99594 * 3 2 1 21 21 H 1.09003 * 109.47277 * 60.00121 * 3 2 1 22 22 H 1.09004 * 109.47066 * 180.02562 * 4 2 1 23 23 H 1.08994 * 109.47405 * 59.99971 * 4 2 1 24 24 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 25 25 H 1.08995 * 115.55525 * 274.41589 * 13 2 1 26 26 H 1.08994 * 117.49938 * 359.97438 * 14 13 2 27 27 H 1.09003 * 117.49752 * 145.02450 * 14 13 2 28 28 H 1.09004 * 117.49717 * 214.97461 * 15 13 2 29 29 H 1.08996 * 117.49803 * 359.97438 * 15 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8660 -0.4852 3.7320 8 7 2.6221 -1.5544 3.8527 9 14 1.2370 0.3909 5.2571 10 1 -0.2481 0.3903 5.2513 11 1 1.7279 -0.3119 6.4697 12 1 1.7313 1.7913 5.2630 13 6 2.0401 -0.7213 -1.2492 14 6 3.0764 0.0040 -2.1100 15 6 1.6375 -0.1483 -2.6096 16 1 -0.3634 0.5138 0.8899 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 3.1300 1.4425 0.0005 20 1 1.6767 1.9564 -0.8900 21 1 1.6766 1.9563 0.8900 22 1 3.1301 -0.7209 1.2495 23 1 1.6767 -1.7488 1.2493 24 1 2.8534 -1.8880 4.7337 25 1 2.1254 -1.8046 -1.1647 26 1 3.3945 0.9951 -1.7865 27 1 3.8433 -0.6023 -2.5921 28 1 1.4584 -0.8548 -3.4201 29 1 1.0090 0.7422 -2.6145 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000406022484.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:43 Heat of formation + Delta-G solvation = 0.910942 kcal Electronic energy + Delta-G solvation = -9896.998220 eV Core-core repulsion = 8206.189475 eV Total energy + Delta-G solvation = -1690.808745 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.29832 -33.82371 -31.78083 -26.90678 -26.48725 -24.04166 -21.75529 -21.31426 -17.45638 -16.22395 -15.34689 -14.35868 -14.01544 -13.01615 -12.77449 -12.09083 -11.99601 -11.50255 -10.96575 -10.93010 -10.78069 -10.47893 -10.23991 -10.17304 -10.04610 -9.93854 -9.28033 -8.82321 -8.76163 -8.27985 -5.92974 -3.93358 3.36347 3.40948 3.43055 4.37259 4.51192 5.28044 5.42500 5.51783 5.54363 5.86844 6.01791 6.08072 6.18435 6.28060 6.44848 6.49798 6.56907 6.78742 6.79257 6.86222 7.22321 7.23792 7.34220 7.76030 7.91893 8.08070 8.51578 9.12066 9.69101 11.18580 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.079043 B = 0.012849 C = 0.012289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.151821 B = 2178.706264 C = 2277.907304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.034 4.034 3 C -0.129 4.129 4 C 0.037 3.963 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.128 4.128 14 C -0.189 4.189 15 C -0.190 4.190 16 H 0.061 0.939 17 H 0.030 0.970 18 H 0.044 0.956 19 H 0.048 0.952 20 H 0.030 0.970 21 H 0.062 0.938 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.259 0.741 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 3.170 -8.152 8.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.186 4.186 4 C 0.000 4.000 5 C -0.548 4.548 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.146 4.146 14 C -0.226 4.226 15 C -0.227 4.227 16 H 0.080 0.920 17 H 0.049 0.951 18 H 0.063 0.937 19 H 0.067 0.933 20 H 0.049 0.951 21 H 0.081 0.919 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.569 3.053 -8.016 8.720 hybrid contribution -0.245 0.325 0.892 0.980 sum -1.814 3.378 -7.124 8.090 Atomic orbital electron populations 1.21710 0.95598 1.00741 0.99999 1.20172 0.94629 0.94648 0.93959 1.21862 1.00250 0.96451 1.00023 1.19106 0.96138 0.94992 0.89799 1.21250 1.30891 1.11878 0.90775 0.92430 1.25020 0.95434 0.95118 0.99020 1.69963 1.37276 1.23131 1.23357 0.86730 0.79185 0.79772 0.82727 1.20344 1.21423 1.20353 1.22538 1.01785 0.98866 0.91380 1.23067 0.91965 1.02704 1.04858 1.22884 0.98260 1.03215 0.98338 0.91988 0.95090 0.93711 0.93341 0.95120 0.91947 0.96619 0.96730 0.93119 0.88627 0.88433 0.89961 0.89977 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.06 37.16 0.30 -2.12 15 2 C -0.03 -0.71 0.63 -154.51 -0.10 -0.81 15 3 C -0.13 -2.51 6.82 37.16 0.25 -2.25 15 4 C 0.04 0.95 4.02 -27.88 -0.11 0.84 15 5 C -0.51 -14.17 7.65 -34.44 -0.26 -14.44 15 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 15 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 15 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 15 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 15 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 13 C -0.13 -2.33 5.15 -90.62 -0.47 -2.79 15 14 C -0.19 -3.00 9.57 -26.69 -0.26 -3.26 15 15 C -0.19 -2.89 9.39 -26.69 -0.25 -3.14 15 16 H 0.06 1.29 6.62 -51.93 -0.34 0.94 15 17 H 0.03 0.52 7.29 -51.93 -0.38 0.14 15 18 H 0.04 0.87 8.14 -51.93 -0.42 0.45 15 19 H 0.05 0.94 6.97 -51.93 -0.36 0.57 15 20 H 0.03 0.51 7.07 -51.93 -0.37 0.15 15 21 H 0.06 1.29 6.62 -51.93 -0.34 0.95 15 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 15 24 H 0.26 7.45 8.31 -40.82 -0.34 7.12 15 25 H 0.10 1.79 8.11 -51.93 -0.42 1.36 15 26 H 0.10 1.54 5.85 -51.93 -0.30 1.24 15 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 29 H 0.09 1.32 7.07 -51.93 -0.37 0.95 15 LS Contribution 231.19 15.07 3.48 3.48 Total: -1.00 -29.14 231.19 -6.22 -35.36 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.43 Total: -2.65 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -0.99 Total: -26.50 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.14 -6.22 -35.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406022484.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.272 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds