Wall clock time and date at job start Mon Mar 30 2020 02:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46608 * 2 1 4 4 C 1.52996 * 109.46840 * 119.99926 * 2 1 3 5 5 C 1.50702 * 109.47159 * 299.99938 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 C 1.52994 * 109.47035 * 239.99696 * 2 1 3 14 14 C 1.53008 * 117.49261 * 128.74779 * 13 2 1 15 15 C 1.53005 * 117.49711 * 60.09159 * 13 2 1 16 16 H 1.08994 * 109.47333 * 300.00159 * 1 2 3 17 17 H 1.09001 * 109.46866 * 60.00026 * 1 2 3 18 18 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 19 19 H 1.09004 * 109.46610 * 179.97438 * 3 2 1 20 20 H 1.09001 * 109.47486 * 299.99594 * 3 2 1 21 21 H 1.09003 * 109.47277 * 60.00121 * 3 2 1 22 22 H 1.09004 * 109.47066 * 180.02562 * 4 2 1 23 23 H 1.08994 * 109.47405 * 59.99971 * 4 2 1 24 24 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 25 25 H 1.08995 * 115.55525 * 274.41589 * 13 2 1 26 26 H 1.08994 * 117.49938 * 359.97438 * 14 13 2 27 27 H 1.09003 * 117.49752 * 145.02450 * 14 13 2 28 28 H 1.09004 * 117.49717 * 214.97461 * 15 13 2 29 29 H 1.08996 * 117.49803 * 359.97438 * 15 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5377 -0.0108 2.4797 6 1 0.9164 0.8671 2.3806 7 6 1.8660 -0.4852 3.7320 8 7 2.6221 -1.5544 3.8527 9 14 1.2370 0.3909 5.2571 10 1 -0.2481 0.3903 5.2513 11 1 1.7279 -0.3119 6.4697 12 1 1.7313 1.7913 5.2630 13 6 2.0401 -0.7213 -1.2492 14 6 3.0764 0.0040 -2.1100 15 6 1.6375 -0.1483 -2.6096 16 1 -0.3634 0.5138 0.8899 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 3.1300 1.4425 0.0005 20 1 1.6767 1.9564 -0.8900 21 1 1.6766 1.9563 0.8900 22 1 3.1301 -0.7209 1.2495 23 1 1.6767 -1.7488 1.2493 24 1 2.8534 -1.8880 4.7337 25 1 2.1254 -1.8046 -1.1647 26 1 3.3945 0.9951 -1.7865 27 1 3.8433 -0.6023 -2.5921 28 1 1.4584 -0.8548 -3.4201 29 1 1.0090 0.7422 -2.6145 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000406022484.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:43 Heat of formation + Delta-G solvation = -15.357724 kcal Electronic energy + Delta-G solvation = -9897.703682 eV Core-core repulsion = 8206.189475 eV Total energy + Delta-G solvation = -1691.514208 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.80091 -35.62656 -33.72456 -28.94091 -28.05143 -25.90594 -23.09920 -22.93359 -19.05760 -18.34555 -16.91490 -16.28197 -15.49884 -14.75904 -14.45350 -14.08046 -13.54891 -13.14330 -12.77174 -12.73811 -12.35697 -12.16847 -12.10540 -11.88119 -11.61357 -11.49035 -10.90036 -10.66273 -10.51804 -10.40274 -8.13675 -6.21632 1.40604 1.43328 1.50691 2.43882 3.08103 3.19555 3.92540 4.15634 4.24446 4.33862 4.53853 4.60161 4.84003 4.90395 4.98232 5.06843 5.16988 5.21257 5.35541 5.37579 5.50937 5.53184 5.57869 5.67701 5.89717 5.93187 6.35196 6.93798 7.45752 8.98504 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.079043 B = 0.012849 C = 0.012289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.151821 B = 2178.706264 C = 2277.907304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.032 4.032 3 C -0.123 4.123 4 C 0.043 3.957 5 C -0.518 4.518 6 H 0.066 0.934 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.267 1.267 13 C -0.161 4.161 14 C -0.185 4.185 15 C -0.161 4.161 16 H 0.045 0.955 17 H 0.064 0.936 18 H 0.036 0.964 19 H 0.042 0.958 20 H 0.063 0.937 21 H 0.045 0.955 22 H -0.017 1.017 23 H -0.019 1.019 24 H 0.260 0.740 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 4.664 -9.237 10.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.032 4.032 3 C -0.179 4.179 4 C 0.006 3.994 5 C -0.556 4.556 6 H 0.084 0.916 7 C -0.203 4.203 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.192 1.192 13 C -0.179 4.179 14 C -0.221 4.221 15 C -0.197 4.197 16 H 0.064 0.936 17 H 0.083 0.917 18 H 0.055 0.945 19 H 0.061 0.939 20 H 0.082 0.918 21 H 0.064 0.936 22 H 0.001 0.999 23 H -0.001 1.001 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.430 4.560 -9.115 10.478 hybrid contribution 0.046 -0.178 1.191 1.205 sum -2.384 4.381 -7.925 9.364 Atomic orbital electron populations 1.21650 0.94630 1.00493 1.00792 1.20031 0.95431 0.95087 0.92645 1.21787 0.99925 0.95453 1.00784 1.18984 0.93938 0.93859 0.92610 1.21648 1.30444 1.11975 0.91582 0.91563 1.25969 0.95702 0.95901 1.02699 1.70117 1.38860 1.24924 1.24121 0.85600 0.78958 0.78770 0.78330 1.19225 1.21284 1.19208 1.22333 1.05378 0.98102 0.92102 1.23166 0.92822 1.02489 1.03651 1.22978 0.97421 1.03273 0.96061 0.93609 0.91733 0.94522 0.93859 0.91770 0.93632 0.99912 1.00059 0.93137 0.90158 0.88245 0.88618 0.87844 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.06 71.99 0.58 -3.91 15 2 C -0.03 -1.31 0.63 -52.18 -0.03 -1.34 15 3 C -0.12 -4.58 6.82 71.98 0.49 -4.09 15 4 C 0.04 2.32 4.02 29.85 0.12 2.44 15 5 C -0.52 -29.30 7.65 25.60 0.20 -29.10 15 6 H 0.07 3.56 5.68 -2.91 -0.02 3.54 15 7 C -0.01 -0.36 5.46 84.66 0.46 0.11 15 8 N -0.94 -58.49 13.29 21.45 0.28 -58.20 15 9 Si 0.96 44.88 29.54 68.60 2.03 46.90 15 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 11 H -0.29 -13.29 7.11 99.48 0.71 -12.59 15 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 13 C -0.16 -5.69 5.15 -10.79 -0.06 -5.74 15 14 C -0.18 -5.40 9.57 30.62 0.29 -5.11 15 15 C -0.16 -4.28 9.39 30.62 0.29 -3.99 15 16 H 0.04 1.85 6.62 -2.39 -0.02 1.83 15 17 H 0.06 1.99 7.29 -2.39 -0.02 1.98 15 18 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 19 H 0.04 1.63 6.97 -2.38 -0.02 1.61 15 20 H 0.06 1.95 7.07 -2.39 -0.02 1.94 15 21 H 0.04 1.83 6.62 -2.39 -0.02 1.81 15 22 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 15 23 H -0.02 -1.13 8.14 -2.39 -0.02 -1.14 15 24 H 0.26 15.31 8.31 -92.70 -0.77 14.54 15 25 H 0.08 3.04 8.11 -2.39 -0.02 3.02 15 26 H 0.10 2.88 5.85 -2.39 -0.01 2.86 15 27 H 0.10 2.53 8.14 -2.39 -0.02 2.51 15 28 H 0.10 2.36 8.14 -2.39 -0.02 2.34 15 29 H 0.10 2.48 7.07 -2.39 -0.02 2.46 15 Total: -1.00 -63.30 231.19 5.76 -57.54 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.10 Total: 4.50 kcal Atomic # 6 Polarization: -53.09 SS G_CDS: 2.34 Total: -50.74 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.28 Total: -58.20 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.30 5.76 -57.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406022484.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.185 kcal (2) G-P(sol) polarization free energy of solvation -63.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds