Wall clock time and date at job start Mon Mar 30 2020 01:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53783 * 113.61558 * 2 1 4 4 C 1.53957 * 87.02186 * 220.04531 * 3 2 1 5 5 C 1.50700 * 113.53579 * 270.81164 * 4 3 2 6 6 O 1.21437 * 120.00131 * 72.49864 * 5 4 3 7 7 C 1.41026 * 119.99835 * 252.49124 * 5 4 3 8 8 H 1.07998 * 120.00070 * 359.97438 * 7 5 4 9 9 C 1.40453 * 119.99870 * 180.02562 * 7 5 4 10 10 N 1.30524 * 120.00186 * 359.97438 * 9 7 5 11 11 Si 1.86804 * 119.99962 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47056 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47172 * 119.99737 * 11 9 7 14 14 H 1.48502 * 109.46874 * 239.99811 * 11 9 7 15 15 C 1.53778 * 113.61679 * 262.39202 * 2 1 3 16 16 H 1.09002 * 109.47153 * 159.13711 * 1 2 3 17 17 H 1.09001 * 109.46832 * 39.13902 * 1 2 3 18 18 H 1.09004 * 109.47261 * 279.13883 * 1 2 3 19 19 H 1.09007 * 112.85239 * 131.19311 * 2 1 3 20 20 H 1.09000 * 113.61048 * 334.56744 * 3 2 1 21 21 H 1.09003 * 113.61260 * 105.46712 * 3 2 1 22 22 H 1.08998 * 113.66516 * 139.92867 * 4 3 2 23 23 H 0.97002 * 119.99535 * 180.02562 * 10 9 7 24 24 H 1.09006 * 113.61506 * 254.52982 * 15 2 1 25 25 H 1.08996 * 113.61642 * 25.43366 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1924 0.8642 -0.9892 5 6 4.4073 0.2776 -0.3176 6 8 4.3272 -0.7883 0.2586 7 6 5.6372 0.9665 -0.3585 8 1 5.7085 1.9142 -0.8715 9 6 6.7696 0.4195 0.2669 10 7 6.6835 -0.7261 0.8864 11 14 8.3985 1.3323 0.2133 12 1 8.2318 2.5984 -0.5445 13 1 8.8404 1.6380 1.5977 14 1 9.4185 0.4858 -0.4563 15 6 2.1460 -0.1865 -1.3966 16 1 -0.3633 -0.9603 -0.3660 17 1 -0.3633 0.7971 -0.6487 18 1 -0.3634 0.1632 1.0147 19 1 1.9533 -0.6616 0.7559 20 1 1.4945 2.1704 -0.4289 21 1 2.5650 1.7024 0.9626 22 1 3.4444 1.5619 -1.7878 23 1 7.4656 -1.1036 1.3187 24 1 2.5651 -1.1795 -1.5599 25 1 1.4946 0.1378 -2.2081 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575490360.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:31 Heat of formation + Delta-G solvation = -38.593049 kcal Electronic energy + Delta-G solvation = -9591.026968 eV Core-core repulsion = 7762.672107 eV Total energy + Delta-G solvation = -1828.354861 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.75575 -35.41519 -32.51112 -29.40541 -26.95421 -24.80380 -22.90048 -19.97111 -17.94192 -16.13341 -15.22413 -14.43259 -13.98543 -13.15581 -12.96725 -12.59580 -12.10544 -11.42284 -11.40109 -11.18387 -11.00847 -10.42967 -10.34496 -10.10935 -9.92236 -9.31768 -9.17317 -8.86269 -7.28027 -6.17121 -4.83640 3.06243 3.16464 3.21592 4.06917 4.25108 5.30160 5.38262 5.50729 5.58177 5.97587 6.16586 6.20738 6.27769 6.38455 6.39048 6.59355 6.80929 6.88545 6.95422 7.21046 7.30928 7.39654 8.16571 8.88740 8.98961 10.41203 10.66374 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.104027 B = 0.012816 C = 0.012198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.095012 B = 2184.162220 C = 2294.816580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C -0.121 4.121 4 C -0.147 4.147 5 C 0.380 3.620 6 O -0.542 6.542 7 C -0.532 4.532 8 H 0.068 0.932 9 C 0.082 3.918 10 N -0.742 5.742 11 Si 0.904 3.096 12 H -0.261 1.261 13 H -0.274 1.274 14 H -0.274 1.274 15 C -0.124 4.124 16 H 0.049 0.951 17 H 0.047 0.953 18 H 0.047 0.953 19 H 0.099 0.901 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.271 0.729 24 H 0.065 0.935 25 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.739 3.433 -1.938 6.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.128 4.128 3 C -0.159 4.159 4 C -0.167 4.167 5 C 0.274 3.726 6 O -0.431 6.431 7 C -0.564 4.564 8 H 0.086 0.914 9 C -0.140 4.140 10 N -0.371 5.371 11 Si 0.728 3.272 12 H -0.185 1.185 13 H -0.199 1.199 14 H -0.199 1.199 15 C -0.161 4.161 16 H 0.068 0.932 17 H 0.066 0.934 18 H 0.066 0.934 19 H 0.117 0.883 20 H 0.085 0.915 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.751 2.771 -1.570 5.720 hybrid contribution 0.828 0.670 -0.161 1.077 sum -3.923 3.442 -1.731 5.498 Atomic orbital electron populations 1.21754 0.96424 1.00737 1.00679 1.22459 0.93369 0.98075 0.98935 1.22798 0.97475 0.95815 0.99771 1.23031 0.96735 0.98153 0.98778 1.19097 0.86614 0.86405 0.80485 1.90370 1.86061 1.23334 1.43298 1.20854 0.95307 1.07143 1.33109 0.91364 1.26028 1.00541 0.94244 0.93229 1.69973 1.29954 1.14759 1.22395 0.86374 0.81598 0.80526 0.78719 1.18476 1.19943 1.19939 1.22754 0.97533 1.00068 0.95744 0.93213 0.93403 0.93364 0.88322 0.91537 0.92014 0.91623 0.91790 0.91619 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.70 37.16 0.36 -1.79 15 2 C -0.11 -2.19 3.94 -89.81 -0.35 -2.54 15 3 C -0.12 -2.44 7.22 -25.83 -0.19 -2.63 15 4 C -0.15 -3.41 4.22 -90.86 -0.38 -3.79 15 5 C 0.38 10.86 6.23 -33.25 -0.21 10.66 15 6 O -0.54 -17.24 13.75 5.42 0.07 -17.17 15 7 C -0.53 -15.20 9.22 -37.69 -0.35 -15.55 15 8 H 0.07 1.82 7.85 -52.49 -0.41 1.40 15 9 C 0.08 2.28 5.50 -17.27 -0.10 2.18 15 10 N -0.74 -21.88 11.72 55.57 0.65 -21.22 15 11 Si 0.90 19.85 29.56 -169.99 -5.03 14.82 15 12 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 14 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 15 C -0.12 -2.55 7.00 -25.92 -0.18 -2.73 15 16 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 17 H 0.05 0.67 7.98 -51.93 -0.41 0.26 15 18 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 19 H 0.10 2.26 7.28 -51.93 -0.38 1.88 15 20 H 0.07 1.15 7.99 -51.93 -0.41 0.73 15 21 H 0.06 1.31 8.09 -51.93 -0.42 0.89 15 22 H 0.07 1.43 8.14 -51.93 -0.42 1.00 15 23 H 0.27 7.16 8.29 -40.82 -0.34 6.82 15 24 H 0.07 1.48 7.88 -51.93 -0.41 1.07 15 25 H 0.06 1.11 8.10 -51.93 -0.42 0.69 15 LS Contribution 217.27 15.07 3.27 3.27 Total: -1.00 -31.59 217.27 -5.69 -37.28 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -3.27 Total: -0.79 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.40 Total: -16.20 kcal Atomic # 7 Polarization: -21.88 SS G_CDS: 0.65 Total: -21.22 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: 0.07 Total: -17.17 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -31.59 -5.69 -37.28 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575490360.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.310 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds