Wall clock time and date at job start Mon Mar 30 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 110.43302 * 2 1 4 4 H 1.08001 * 119.99531 * 118.91681 * 3 2 1 5 5 C 1.37874 * 120.00355 * 298.91212 * 3 2 1 6 6 N 1.31518 * 119.99746 * 0.02562 * 5 3 2 7 7 Si 1.86799 * 120.00248 * 179.97438 * 5 3 2 8 8 H 1.48504 * 109.46853 * 90.00020 * 7 5 3 9 9 H 1.48494 * 109.47270 * 210.00108 * 7 5 3 10 10 H 1.48499 * 109.47017 * 330.00533 * 7 5 3 11 11 C 1.54623 * 110.59978 * 122.62085 * 2 1 3 12 12 C 1.54479 * 101.76448 * 93.93464 * 11 2 1 13 13 N 1.46762 * 105.53509 * 25.20998 * 12 11 2 14 14 C 1.34417 * 111.30037 * 343.36548 * 13 12 11 15 15 O 1.21283 * 124.94355 * 180.27867 * 14 13 12 16 16 H 1.09003 * 109.47183 * 181.08454 * 1 2 3 17 17 H 1.09004 * 109.47206 * 301.08630 * 1 2 3 18 18 H 1.09004 * 109.47141 * 61.08259 * 1 2 3 19 19 H 0.96998 * 119.99939 * 179.97438 * 6 5 3 20 20 H 1.09006 * 110.96977 * 212.05534 * 11 2 1 21 21 H 1.09001 * 110.96989 * 335.78219 * 11 2 1 22 22 H 1.09004 * 110.24168 * 144.41384 * 12 11 2 23 23 H 1.08994 * 110.24785 * 266.41195 * 12 11 2 24 24 H 0.96995 * 124.34962 * 163.21123 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0561 1.4122 0.0000 4 1 2.6684 1.7603 0.8187 5 6 1.7559 2.2598 -1.0452 6 7 1.0099 1.8360 -2.0419 7 14 2.4074 4.0105 -1.0448 8 1 3.7289 4.0469 -1.7213 9 1 1.4566 4.8927 -1.7678 10 1 2.5549 4.4834 0.3551 11 6 2.0740 -0.7802 1.2191 12 6 2.2820 -2.1903 0.6233 13 7 2.4734 -1.9841 -0.8171 14 6 2.0595 -0.7622 -1.1947 15 8 2.0997 -0.3350 -2.3291 16 1 -0.3634 -1.0275 0.0195 17 1 -0.3634 0.5306 0.8801 18 1 -0.3633 0.4969 -0.8996 19 1 0.7983 2.4324 -2.7771 20 1 3.0188 -0.3585 1.5622 21 1 1.3424 -0.8015 2.0267 22 1 3.1641 -2.6581 1.0605 23 1 1.4009 -2.8075 0.7984 24 1 2.8522 -2.6438 -1.4189 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575522159.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:35 Heat of formation + Delta-G solvation = -31.458011 kcal Electronic energy + Delta-G solvation = -10153.471829 eV Core-core repulsion = 8260.000455 eV Total energy + Delta-G solvation = -1893.471374 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.00221 -34.84128 -33.27254 -30.52386 -27.45561 -25.24962 -23.38843 -20.59679 -18.64566 -16.17437 -15.71049 -14.78863 -14.32805 -13.47273 -12.62817 -12.54087 -12.16781 -11.70508 -11.24122 -11.03157 -10.84564 -10.57679 -10.44187 -9.98245 -9.37737 -8.97590 -8.30943 -7.98068 -7.89893 -5.80756 -3.92793 3.38586 3.45046 3.46527 4.31107 4.51244 4.56695 5.43276 5.60764 5.79151 5.93141 6.17252 6.51727 6.65101 6.82635 6.88573 7.15341 7.38334 7.82431 8.02266 8.11108 8.24413 8.46935 9.00600 9.69361 9.92801 11.19411 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.065445 B = 0.019687 C = 0.018307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.737800 B = 1421.922340 C = 1529.084012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.533 4.533 4 H 0.060 0.940 5 C 0.075 3.925 6 N -0.833 5.833 7 Si 0.889 3.111 8 H -0.282 1.282 9 H -0.287 1.287 10 H -0.275 1.275 11 C -0.128 4.128 12 C 0.111 3.889 13 N -0.765 5.765 14 C 0.519 3.481 15 O -0.496 6.496 16 H 0.011 0.989 17 H 0.039 0.961 18 H 0.084 0.916 19 H 0.257 0.743 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 -5.335 5.223 7.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.046 3.954 3 C -0.571 4.571 4 H 0.078 0.922 5 C -0.133 4.133 6 N -0.466 5.466 7 Si 0.717 3.283 8 H -0.208 1.208 9 H -0.213 1.213 10 H -0.200 1.200 11 C -0.166 4.166 12 C -0.015 4.015 13 N -0.425 5.425 14 C 0.306 3.694 15 O -0.366 6.366 16 H 0.030 0.970 17 H 0.058 0.942 18 H 0.102 0.898 19 H 0.068 0.932 20 H 0.087 0.913 21 H 0.086 0.914 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.643 -4.913 4.462 6.669 hybrid contribution 0.625 0.501 -0.255 0.840 sum 1.268 -4.413 4.207 6.228 Atomic orbital electron populations 1.21637 0.95889 0.97281 1.02990 1.18802 0.93793 0.94773 0.88035 1.20669 1.34699 0.94247 1.07465 0.92204 1.25006 0.94901 0.98140 0.95255 1.70042 1.34194 1.34359 1.08009 0.86658 0.78804 0.84929 0.77912 1.20826 1.21276 1.19955 1.22719 1.01415 0.93519 0.98900 1.21796 0.99241 0.98438 0.81983 1.46723 1.68197 1.18083 1.09473 1.22085 0.75968 0.79938 0.91378 1.90643 1.53456 1.70355 1.22161 0.97031 0.94198 0.89775 0.93230 0.91321 0.91394 0.92652 0.93197 0.77978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.88 8.29 37.16 0.31 -2.58 14 2 C 0.05 1.24 0.57 -155.67 -0.09 1.15 14 3 C -0.53 -14.87 8.02 -34.44 -0.28 -15.14 14 4 H 0.06 1.63 7.63 -52.49 -0.40 1.23 14 5 C 0.07 2.14 5.00 -17.82 -0.09 2.05 14 6 N -0.83 -25.03 9.00 55.43 0.50 -24.53 14 7 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 14 8 H -0.28 -7.05 7.11 56.52 0.40 -6.65 14 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 14 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 14 11 C -0.13 -2.51 6.21 -25.10 -0.16 -2.67 14 12 C 0.11 1.88 7.78 -3.12 -0.02 1.86 14 13 N -0.77 -15.61 6.24 -59.20 -0.37 -15.98 14 14 C 0.52 13.53 7.09 -10.86 -0.08 13.46 14 15 O -0.50 -15.06 15.15 5.55 0.08 -14.98 14 16 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 14 17 H 0.04 0.89 8.14 -51.93 -0.42 0.47 14 18 H 0.08 2.29 6.27 -51.93 -0.33 1.97 14 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 14 20 H 0.07 1.34 7.79 -51.93 -0.40 0.94 14 21 H 0.07 1.19 7.91 -51.93 -0.41 0.78 14 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 14 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 14 24 H 0.38 6.86 8.96 -40.82 -0.37 6.49 14 LS Contribution 203.66 15.07 3.07 3.07 Total: -1.00 -32.36 203.66 -4.87 -37.23 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -2.73 Total: 0.10 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.40 Total: -1.87 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.13 Total: -40.51 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.08 Total: -14.98 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -32.36 -4.87 -37.23 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575522159.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.776 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds