Wall clock time and date at job start Mon Mar 30 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 115.55317 * 2 1 4 4 C 1.53002 * 117.49722 * 145.66438 * 2 1 3 5 5 C 1.52997 * 117.51939 * 214.29521 * 2 1 3 6 6 C 1.52999 * 117.49925 * 145.03527 * 5 2 1 7 7 C 1.50699 * 117.49775 * 0.02562 * 5 2 1 8 8 O 1.21429 * 120.00003 * 359.97438 * 7 5 2 9 9 C 1.41030 * 120.00108 * 179.97438 * 7 5 2 10 10 H 1.07998 * 119.99709 * 355.19556 * 9 7 5 11 11 C 1.40454 * 120.00275 * 175.19127 * 9 7 5 12 12 N 1.30528 * 119.99837 * 6.41742 * 11 9 7 13 13 Si 1.86803 * 120.00121 * 186.41671 * 11 9 7 14 14 H 1.48500 * 109.46987 * 94.98699 * 13 11 9 15 15 H 1.48504 * 109.47125 * 214.98156 * 13 11 9 16 16 H 1.48495 * 109.46989 * 334.98345 * 13 11 9 17 17 H 1.09000 * 109.47074 * 325.72815 * 1 2 3 18 18 H 1.08999 * 109.46824 * 85.72575 * 1 2 3 19 19 H 1.08994 * 109.47243 * 205.72324 * 1 2 3 20 20 H 1.08993 * 117.49995 * 215.00308 * 4 2 1 21 21 H 1.09003 * 117.49562 * 0.02872 * 4 2 1 22 22 H 1.08999 * 109.47217 * 180.02562 * 6 5 2 23 23 H 1.09003 * 109.46807 * 300.00590 * 6 5 2 24 24 H 1.08998 * 109.47444 * 60.00847 * 6 5 2 25 25 H 0.96998 * 119.99831 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1207 0.7655 5 6 2.2370 -1.1210 -0.7645 6 6 3.5497 -0.7758 -1.4705 7 6 1.3730 -2.1407 -1.4607 8 8 0.1632 -2.0536 -1.4013 9 6 1.9693 -3.1962 -2.1813 10 1 3.0423 -3.2306 -2.2996 11 6 1.1680 -4.2026 -2.7450 12 7 -0.1326 -4.0969 -2.7109 13 14 1.9634 -5.6923 -3.5434 14 1 2.0418 -6.7997 -2.5570 15 1 1.1492 -6.1236 -4.7080 16 1 3.3313 -5.3380 -3.9997 17 1 -0.3633 0.8492 0.5787 18 1 -0.3633 0.0766 -1.0248 19 1 -0.3633 -0.9258 0.4460 20 1 3.1713 -0.8746 1.2690 21 1 1.6111 -1.8582 1.2687 22 1 3.9376 -1.6632 -1.9707 23 1 3.3709 0.0073 -2.2074 24 1 4.2757 -0.4255 -0.7368 25 1 -0.6860 -4.7917 -3.1005 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575568045.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:55 Heat of formation + Delta-G solvation = -28.706770 kcal Electronic energy + Delta-G solvation = -9722.675218 eV Core-core repulsion = 7894.749058 eV Total energy + Delta-G solvation = -1827.926160 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.28679 -34.97103 -32.51587 -29.62151 -26.64412 -26.00695 -22.04124 -20.21879 -18.18610 -15.89963 -15.08329 -14.33646 -13.58264 -13.03662 -12.59732 -12.04051 -11.77864 -11.54685 -11.32246 -11.22440 -11.07831 -10.79206 -10.48928 -10.31142 -9.99888 -9.11076 -8.86316 -8.58279 -7.18169 -6.15275 -4.81801 3.06936 3.16262 3.19864 4.06432 4.13325 4.74465 5.46835 5.59405 5.76520 6.00778 6.15152 6.18620 6.43682 6.56664 6.62562 6.71713 6.83996 6.98959 7.04191 7.13108 7.33994 7.46996 8.18134 8.89384 8.99119 10.41186 10.66329 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.067088 B = 0.016544 C = 0.014220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.263669 B = 1692.096279 C = 1968.540461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.145 4.145 3 H 0.086 0.914 4 C -0.166 4.166 5 C -0.155 4.155 6 C -0.104 4.104 7 C 0.396 3.604 8 O -0.537 6.537 9 C -0.529 4.529 10 H 0.071 0.929 11 C 0.083 3.917 12 N -0.742 5.742 13 Si 0.903 3.097 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.262 1.262 17 H 0.025 0.975 18 H 0.064 0.936 19 H 0.062 0.938 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.038 0.962 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 2.293 1.884 5.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.163 4.163 3 H 0.104 0.896 4 C -0.204 4.204 5 C -0.157 4.157 6 C -0.161 4.161 7 C 0.291 3.709 8 O -0.425 6.425 9 C -0.560 4.560 10 H 0.089 0.911 11 C -0.140 4.140 12 N -0.371 5.371 13 Si 0.727 3.273 14 H -0.196 1.196 15 H -0.203 1.203 16 H -0.186 1.186 17 H 0.044 0.956 18 H 0.083 0.917 19 H 0.081 0.919 20 H 0.099 0.901 21 H 0.105 0.895 22 H 0.089 0.911 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.843 2.309 1.891 4.865 hybrid contribution 0.678 -0.737 -0.326 1.054 sum 4.521 1.572 1.564 5.035 Atomic orbital electron populations 1.21193 0.92316 0.99799 1.01944 1.22244 0.95982 0.92803 1.05290 0.89580 1.22971 1.01435 1.01830 0.94118 1.22568 0.98879 1.00908 0.93309 1.21246 0.94394 1.01394 0.99053 1.18702 0.87822 0.83582 0.80839 1.90384 1.15675 1.74922 1.61553 1.20766 0.94973 1.08066 1.32221 0.91085 1.26011 0.94416 0.99094 0.94459 1.69965 1.04877 1.30814 1.31428 0.86427 0.80243 0.81524 0.79089 1.19599 1.20291 1.18593 0.95581 0.91676 0.91911 0.90146 0.89478 0.91140 0.93337 0.94288 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 8.43 37.16 0.31 -1.75 15 2 C -0.14 -3.02 6.13 -90.62 -0.56 -3.57 15 3 H 0.09 1.58 8.14 -51.93 -0.42 1.16 15 4 C -0.17 -3.40 9.53 -26.73 -0.25 -3.66 15 5 C -0.16 -3.59 2.56 -155.66 -0.40 -3.99 15 6 C -0.10 -2.04 9.73 37.16 0.36 -1.68 15 7 C 0.40 11.21 6.52 -33.25 -0.22 10.99 15 8 O -0.54 -16.70 11.65 5.43 0.06 -16.64 15 9 C -0.53 -14.81 8.78 -37.69 -0.33 -15.14 15 10 H 0.07 1.85 6.19 -52.49 -0.32 1.52 15 11 C 0.08 2.27 5.50 -17.27 -0.09 2.17 15 12 N -0.74 -21.63 11.75 55.57 0.65 -20.97 15 13 Si 0.90 19.71 29.57 -169.99 -5.03 14.68 15 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 15 H -0.28 -5.91 7.11 56.52 0.40 -5.50 15 16 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 17 H 0.03 0.47 8.14 -51.93 -0.42 0.04 15 18 H 0.06 1.55 7.26 -51.93 -0.38 1.17 15 19 H 0.06 1.48 7.02 -51.93 -0.36 1.12 15 20 H 0.08 1.41 8.05 -51.93 -0.42 0.99 15 21 H 0.09 1.87 8.05 -51.93 -0.42 1.45 15 22 H 0.07 1.42 6.10 -51.93 -0.32 1.10 15 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.04 0.65 7.90 -51.93 -0.41 0.24 15 25 H 0.27 7.12 8.29 -40.82 -0.34 6.78 15 LS Contribution 214.73 15.07 3.24 3.24 Total: -1.00 -31.03 214.73 -5.28 -36.31 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -3.03 Total: 0.02 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -1.18 Total: -16.63 kcal Atomic # 7 Polarization: -21.63 SS G_CDS: 0.65 Total: -20.97 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.06 Total: -16.64 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -31.03 -5.28 -36.31 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575568045.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.600 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds