Wall clock time and date at job start Mon Mar 30 2020 01:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.54781 * 2 1 4 4 C 1.52994 * 117.51638 * 214.29921 * 2 1 3 5 5 C 1.52994 * 117.50011 * 145.66701 * 2 1 3 6 6 C 1.52997 * 117.50137 * 215.00174 * 5 2 1 7 7 C 1.50704 * 117.49847 * 359.97438 * 5 2 1 8 8 O 1.21436 * 119.99738 * 359.91294 * 7 5 2 9 9 C 1.41030 * 120.00154 * 179.90870 * 7 5 2 10 10 H 1.07998 * 119.99560 * 0.02562 * 9 7 5 11 11 C 1.40457 * 120.00092 * 180.02562 * 9 7 5 12 12 N 1.30522 * 119.99868 * 0.02562 * 11 9 7 13 13 Si 1.86792 * 119.99995 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47277 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47431 * 120.00180 * 13 11 9 16 16 H 1.48502 * 109.47369 * 239.99978 * 13 11 9 17 17 H 1.09004 * 109.46959 * 274.33085 * 1 2 3 18 18 H 1.09000 * 109.46988 * 34.32622 * 1 2 3 19 19 H 1.08992 * 109.47169 * 154.33503 * 1 2 3 20 20 H 1.08997 * 117.49825 * 145.02646 * 4 2 1 21 21 H 1.08999 * 117.49881 * 0.02562 * 4 2 1 22 22 H 1.09002 * 109.47153 * 60.00005 * 6 5 2 23 23 H 1.09001 * 109.46832 * 300.00196 * 6 5 2 24 24 H 1.09004 * 109.47261 * 180.02562 * 6 5 2 25 25 H 0.97000 * 119.99866 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7646 5 6 2.2365 -1.1206 0.7654 6 6 3.5487 -0.7752 1.4721 7 6 1.3721 -2.1397 1.4621 8 8 0.1623 -2.0511 1.4041 9 6 1.9680 -3.1963 2.1814 10 1 3.0439 -3.2748 2.2333 11 6 1.1623 -4.1463 2.8304 12 7 -0.1379 -4.0516 2.7672 13 14 1.9517 -5.5453 3.7837 14 1 3.4299 -5.4283 3.7015 15 1 1.5276 -5.4770 5.2052 16 1 1.5253 -6.8434 3.2018 17 1 -0.3633 0.0776 1.0248 18 1 -0.3633 0.8487 -0.5795 19 1 -0.3633 -0.9262 -0.4451 20 1 3.1720 -0.8750 -1.2677 21 1 1.6119 -1.8584 -1.2682 22 1 3.3695 0.0080 2.2087 23 1 4.2751 -0.4250 0.7387 24 1 3.9368 -1.6627 1.9721 25 1 -0.6943 -4.7075 3.2157 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575568046.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:57 Heat of formation + Delta-G solvation = -28.799955 kcal Electronic energy + Delta-G solvation = -9722.741110 eV Core-core repulsion = 7894.810909 eV Total energy + Delta-G solvation = -1827.930201 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.28510 -34.97204 -32.51195 -29.61532 -26.64231 -26.00788 -22.04055 -20.21987 -18.18311 -15.90435 -15.08076 -14.33282 -13.57232 -13.04651 -12.59597 -12.04145 -11.74218 -11.56609 -11.32787 -11.21698 -11.07191 -10.78750 -10.48871 -10.28917 -10.02189 -9.11733 -8.85570 -8.58986 -7.18410 -6.14355 -4.82146 3.05821 3.16364 3.21025 4.06350 4.13713 4.74155 5.48105 5.59386 5.76485 6.00511 6.15282 6.19086 6.43794 6.56834 6.62778 6.72043 6.84162 6.99052 7.05105 7.13058 7.33548 7.47050 8.18188 8.89388 8.99142 10.41443 10.66582 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.067591 B = 0.016518 C = 0.014175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.157845 B = 1694.698605 C = 1974.849502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.145 4.145 3 H 0.086 0.914 4 C -0.166 4.166 5 C -0.156 4.156 6 C -0.104 4.104 7 C 0.396 3.604 8 O -0.536 6.536 9 C -0.527 4.527 10 H 0.071 0.929 11 C 0.082 3.918 12 N -0.742 5.742 13 Si 0.903 3.097 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.275 1.275 17 H 0.064 0.936 18 H 0.025 0.975 19 H 0.062 0.938 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.048 0.952 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 2.391 -1.708 5.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.163 4.163 3 H 0.104 0.896 4 C -0.204 4.204 5 C -0.157 4.157 6 C -0.161 4.161 7 C 0.290 3.710 8 O -0.425 6.425 9 C -0.559 4.559 10 H 0.089 0.911 11 C -0.140 4.140 12 N -0.371 5.371 13 Si 0.727 3.273 14 H -0.185 1.185 15 H -0.200 1.200 16 H -0.200 1.200 17 H 0.083 0.917 18 H 0.044 0.956 19 H 0.081 0.919 20 H 0.098 0.902 21 H 0.105 0.895 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.846 2.409 -1.717 4.852 hybrid contribution 0.667 -0.683 0.420 1.043 sum 4.513 1.726 -1.297 5.002 Atomic orbital electron populations 1.21195 0.92313 0.99803 1.01940 1.22242 0.95983 0.92803 1.05284 0.89582 1.22969 1.01428 1.01831 0.94129 1.22573 0.98899 1.00936 0.93281 1.21246 0.94374 1.01402 0.99040 1.18714 0.87828 0.83729 0.80707 1.90386 1.15668 1.75397 1.61026 1.20788 0.94691 1.09842 1.30591 0.91098 1.26014 0.94425 0.98311 0.95275 1.69968 1.04731 1.30922 1.31501 0.86389 0.80568 0.80828 0.79521 1.18477 1.19968 1.19988 0.91674 0.95587 0.91907 0.90155 0.89469 0.93333 0.94314 0.91135 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 8.43 37.16 0.31 -1.75 15 2 C -0.14 -3.02 6.13 -90.62 -0.56 -3.57 15 3 H 0.09 1.58 8.14 -51.93 -0.42 1.16 15 4 C -0.17 -3.40 9.53 -26.73 -0.25 -3.66 15 5 C -0.16 -3.59 2.56 -155.66 -0.40 -3.99 15 6 C -0.10 -2.04 9.73 37.16 0.36 -1.68 15 7 C 0.40 11.20 6.53 -33.25 -0.22 10.98 15 8 O -0.54 -16.69 11.62 5.42 0.06 -16.62 15 9 C -0.53 -14.77 8.73 -37.69 -0.33 -15.10 15 10 H 0.07 1.85 6.30 -52.49 -0.33 1.51 15 11 C 0.08 2.25 5.50 -17.27 -0.10 2.16 15 12 N -0.74 -21.64 11.72 55.57 0.65 -20.98 15 13 Si 0.90 19.69 29.56 -169.99 -5.03 14.67 15 14 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 17 H 0.06 1.55 7.25 -51.93 -0.38 1.17 15 18 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 19 H 0.06 1.48 7.02 -51.93 -0.36 1.12 15 20 H 0.08 1.41 8.05 -51.93 -0.42 0.99 15 21 H 0.09 1.87 8.05 -51.93 -0.42 1.45 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 23 H 0.04 0.65 7.90 -51.93 -0.41 0.24 15 24 H 0.07 1.42 6.15 -51.93 -0.32 1.10 15 25 H 0.27 7.09 8.29 -40.82 -0.34 6.76 15 LS Contribution 214.79 15.07 3.24 3.24 Total: -1.00 -31.04 214.79 -5.29 -36.33 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.04 Total: -0.01 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -1.17 Total: -16.62 kcal Atomic # 7 Polarization: -21.64 SS G_CDS: 0.65 Total: -20.98 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.06 Total: -16.62 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -31.04 -5.29 -36.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575568046.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.532 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds