Wall clock time and date at job start Mon Mar 30 2020 01:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.54781 * 2 1 4 4 C 1.52994 * 117.51638 * 214.29921 * 2 1 3 5 5 C 1.52994 * 117.50011 * 145.66701 * 2 1 3 6 6 C 1.52997 * 117.50137 * 215.00174 * 5 2 1 7 7 C 1.50704 * 117.49847 * 359.97438 * 5 2 1 8 8 O 1.21436 * 119.99738 * 359.91294 * 7 5 2 9 9 C 1.41030 * 120.00154 * 179.90870 * 7 5 2 10 10 H 1.07998 * 119.99560 * 0.02562 * 9 7 5 11 11 C 1.40457 * 120.00092 * 180.02562 * 9 7 5 12 12 N 1.30522 * 119.99868 * 0.02562 * 11 9 7 13 13 Si 1.86792 * 119.99995 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47277 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47431 * 120.00180 * 13 11 9 16 16 H 1.48502 * 109.47369 * 239.99978 * 13 11 9 17 17 H 1.09004 * 109.46959 * 274.33085 * 1 2 3 18 18 H 1.09000 * 109.46988 * 34.32622 * 1 2 3 19 19 H 1.08992 * 109.47169 * 154.33503 * 1 2 3 20 20 H 1.08997 * 117.49825 * 145.02646 * 4 2 1 21 21 H 1.08999 * 117.49881 * 0.02562 * 4 2 1 22 22 H 1.09002 * 109.47153 * 60.00005 * 6 5 2 23 23 H 1.09001 * 109.46832 * 300.00196 * 6 5 2 24 24 H 1.09004 * 109.47261 * 180.02562 * 6 5 2 25 25 H 0.97000 * 119.99866 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7646 5 6 2.2365 -1.1206 0.7654 6 6 3.5487 -0.7752 1.4721 7 6 1.3721 -2.1397 1.4621 8 8 0.1623 -2.0511 1.4041 9 6 1.9680 -3.1963 2.1814 10 1 3.0439 -3.2748 2.2333 11 6 1.1623 -4.1463 2.8304 12 7 -0.1379 -4.0516 2.7672 13 14 1.9517 -5.5453 3.7837 14 1 3.4299 -5.4283 3.7015 15 1 1.5276 -5.4770 5.2052 16 1 1.5253 -6.8434 3.2018 17 1 -0.3633 0.0776 1.0248 18 1 -0.3633 0.8487 -0.5795 19 1 -0.3633 -0.9262 -0.4451 20 1 3.1720 -0.8750 -1.2677 21 1 1.6119 -1.8584 -1.2682 22 1 3.3695 0.0080 2.2087 23 1 4.2751 -0.4250 0.7387 24 1 3.9368 -1.6627 1.9721 25 1 -0.6943 -4.7075 3.2157 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575568046.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:57 Heat of formation + Delta-G solvation = -48.398504 kcal Electronic energy + Delta-G solvation = -9723.590967 eV Core-core repulsion = 7894.810909 eV Total energy + Delta-G solvation = -1828.780058 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.14366 -36.96130 -34.64498 -31.36164 -28.66251 -27.69107 -24.00185 -21.89273 -20.10068 -18.02947 -16.95069 -16.00110 -15.40906 -14.97828 -14.37445 -13.77275 -13.59963 -13.40191 -13.16760 -12.92749 -12.80027 -12.56189 -12.13524 -12.05863 -12.00778 -11.00999 -10.71977 -10.30865 -9.28637 -8.20524 -7.01817 1.33155 1.37395 1.54907 2.15881 2.22234 2.94609 3.56475 3.92859 4.08807 4.25687 4.53318 4.55758 4.88915 4.94268 5.00772 5.08556 5.10076 5.24488 5.28306 5.36136 5.51286 5.71291 6.06761 6.77982 6.91070 8.35306 8.58489 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.067591 B = 0.016518 C = 0.014175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.157845 B = 1694.698605 C = 1974.849502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.139 4.139 3 H 0.123 0.877 4 C -0.149 4.149 5 C -0.186 4.186 6 C -0.095 4.095 7 C 0.369 3.631 8 O -0.581 6.581 9 C -0.557 4.557 10 H 0.085 0.915 11 C 0.025 3.975 12 N -0.793 5.793 13 Si 0.990 3.010 14 H -0.247 1.247 15 H -0.266 1.266 16 H -0.266 1.266 17 H 0.033 0.967 18 H 0.064 0.936 19 H 0.029 0.971 20 H 0.122 0.878 21 H 0.065 0.935 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.714 2.621 -1.859 7.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 H 0.141 0.859 4 C -0.186 4.186 5 C -0.187 4.187 6 C -0.152 4.152 7 C 0.267 3.733 8 O -0.473 6.473 9 C -0.588 4.588 10 H 0.104 0.896 11 C -0.193 4.193 12 N -0.423 5.423 13 Si 0.809 3.191 14 H -0.170 1.170 15 H -0.190 1.190 16 H -0.191 1.191 17 H 0.052 0.948 18 H 0.082 0.918 19 H 0.049 0.951 20 H 0.140 0.860 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.974 2.652 -1.879 6.801 hybrid contribution -0.043 -0.724 0.431 0.844 sum 5.931 1.928 -1.447 6.402 Atomic orbital electron populations 1.21065 0.93643 0.99720 1.00247 1.22403 0.95111 0.94133 1.04046 0.85890 1.23031 1.02617 1.00745 0.92209 1.22424 1.00142 1.01300 0.94868 1.21189 0.93178 1.01119 0.99718 1.19491 0.87986 0.85068 0.80784 1.90354 1.17617 1.76753 1.62617 1.21307 0.95686 1.10599 1.31175 0.89642 1.27224 0.94791 1.01325 0.95932 1.70106 1.06846 1.32561 1.32776 0.85089 0.79944 0.76374 0.77705 1.16953 1.19023 1.19124 0.94821 0.91758 0.95135 0.86037 0.91590 0.92881 0.90728 0.92280 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.89 8.43 71.98 0.61 -3.28 15 2 C -0.14 -5.51 6.13 -10.80 -0.07 -5.57 15 3 H 0.12 3.99 8.14 -2.39 -0.02 3.97 15 4 C -0.15 -5.77 9.53 30.59 0.29 -5.48 15 5 C -0.19 -8.40 2.56 -52.93 -0.14 -8.53 15 6 C -0.10 -3.50 9.73 71.98 0.70 -2.80 15 7 C 0.37 21.38 6.53 26.37 0.17 21.56 15 8 O -0.58 -37.85 11.62 -3.51 -0.04 -37.89 15 9 C -0.56 -31.56 8.73 23.50 0.21 -31.36 15 10 H 0.09 4.42 6.30 -2.91 -0.02 4.41 15 11 C 0.03 1.41 5.50 85.43 0.47 1.88 15 12 N -0.79 -47.69 11.72 21.91 0.26 -47.43 15 13 Si 0.99 40.32 29.56 68.60 2.03 42.34 15 14 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 15 H -0.27 -10.36 7.11 99.48 0.71 -9.65 15 16 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 17 H 0.03 1.63 7.25 -2.39 -0.02 1.62 15 18 H 0.06 2.23 8.14 -2.39 -0.02 2.21 15 19 H 0.03 1.47 7.02 -2.39 -0.02 1.46 15 20 H 0.12 3.70 8.05 -2.39 -0.02 3.68 15 21 H 0.07 2.81 8.05 -2.39 -0.02 2.79 15 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.07 2.19 7.90 -2.39 -0.02 2.17 15 24 H 0.06 2.27 6.15 -2.38 -0.01 2.26 15 25 H 0.28 15.01 8.29 -92.71 -0.77 14.24 15 Total: -1.00 -69.61 214.79 5.66 -63.96 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.17 Total: 12.61 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 2.24 Total: -33.59 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.26 Total: -47.43 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.04 Total: -37.89 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Total: -69.61 5.66 -63.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575568046.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.557 kcal (2) G-P(sol) polarization free energy of solvation -69.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds