Wall clock time and date at job start Mon Mar 30 2020 01:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86794 * 120.00513 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00114 * 3 2 1 5 5 H 1.48501 * 109.46931 * 29.99986 * 3 2 1 6 6 H 1.48494 * 109.47332 * 149.99503 * 3 2 1 7 7 C 1.40314 * 119.99479 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99527 * 179.97438 * 7 2 1 9 9 C 1.40069 * 120.00076 * 0.27878 * 7 2 1 10 10 C 1.35030 * 119.99786 * 179.72025 * 9 7 2 11 11 C 1.50702 * 119.99823 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.87303 * 358.99871 * 11 10 9 13 13 C 1.54100 * 109.87777 * 120.00186 * 11 10 9 14 14 C 1.54815 * 104.18937 * 121.45651 * 13 11 10 15 15 C 1.54996 * 102.09165 * 20.87834 * 14 13 11 16 16 O 1.43743 * 109.88134 * 237.83486 * 11 10 9 17 17 H 0.97005 * 119.99603 * 359.97438 * 1 2 3 18 18 H 1.08002 * 120.00335 * 359.72425 * 9 7 2 19 19 H 1.08001 * 120.00409 * 0.02562 * 10 9 7 20 20 H 1.08997 * 110.49319 * 240.12996 * 13 11 10 21 21 H 1.09003 * 110.48898 * 2.64989 * 13 11 10 22 22 H 1.08992 * 110.90890 * 139.08344 * 14 13 11 23 23 H 1.09007 * 110.90470 * 262.68531 * 14 13 11 24 24 H 1.09006 * 110.61078 * 81.47748 * 15 14 13 25 25 H 1.08992 * 110.62269 * 204.31966 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2411 1.6176 0.0000 4 1 2.4886 2.0463 -1.4001 5 1 1.4386 2.6526 0.7000 6 1 3.5385 1.4400 0.7001 7 6 2.0084 -1.2152 0.0005 8 1 3.0884 -1.2152 0.0001 9 6 1.3080 -2.4282 -0.0048 10 6 1.9831 -3.5976 -0.0100 11 6 1.2295 -4.9027 -0.0152 12 1 0.1566 -4.7111 0.0040 13 6 1.5945 -5.7135 -1.2738 14 6 2.1613 -7.0426 -0.7178 15 6 1.5694 -7.0741 0.7143 16 8 1.6087 -5.6906 1.1256 17 1 -0.4850 0.8401 0.0004 18 1 0.2280 -2.4282 -0.0049 19 1 3.0631 -3.5977 -0.0096 20 1 0.7068 -5.9005 -1.8779 21 1 2.3500 -5.1896 -1.8593 22 1 1.8082 -7.8912 -1.3035 23 1 3.2507 -7.0186 -0.6879 24 1 0.5428 -7.4404 0.6973 25 1 2.1845 -7.6897 1.3705 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687677777.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:08 Heat of formation + Delta-G solvation = -74.459512 kcal Electronic energy + Delta-G solvation = -9232.692576 eV Core-core repulsion = 7402.782428 eV Total energy + Delta-G solvation = -1829.910148 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.04793 -36.26806 -33.63410 -32.70799 -29.91959 -26.60985 -23.33473 -22.20958 -20.57398 -19.07487 -17.20049 -16.66680 -16.58578 -15.74871 -14.73551 -14.38931 -14.18433 -13.16204 -13.05112 -12.94065 -12.45520 -12.23515 -12.05183 -11.68363 -11.65675 -11.47736 -11.31024 -10.44878 -9.81329 -8.76256 -6.42312 1.20911 1.35757 1.51419 1.87132 2.19476 3.13826 3.56462 3.88888 4.05113 4.13947 4.37648 4.55738 4.77214 4.91161 4.96226 5.00660 5.07508 5.17374 5.19886 5.46722 5.86964 6.20097 6.36008 6.54187 6.92135 7.11917 8.29646 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.113769 B = 0.009498 C = 0.009397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 246.054055 B = 2947.310772 C = 2978.887237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.028 3.972 3 Si 0.995 3.005 4 H -0.256 1.256 5 H -0.261 1.261 6 H -0.260 1.260 7 C -0.498 4.498 8 H 0.066 0.934 9 C 0.039 3.961 10 C -0.419 4.419 11 C 0.144 3.856 12 H 0.033 0.967 13 C -0.144 4.144 14 C -0.143 4.143 15 C 0.032 3.968 16 O -0.413 6.413 17 H 0.294 0.706 18 H 0.062 0.938 19 H 0.063 0.937 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.700 -6.386 -2.107 6.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.180 1.180 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.084 0.916 9 C 0.018 3.982 10 C -0.441 4.441 11 C 0.087 3.913 12 H 0.051 0.949 13 C -0.182 4.182 14 C -0.181 4.181 15 C -0.044 4.044 16 O -0.333 6.333 17 H 0.104 0.896 18 H 0.080 0.920 19 H 0.081 0.919 20 H 0.098 0.902 21 H 0.084 0.916 22 H 0.124 0.876 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.522 -6.162 -1.905 6.627 hybrid contribution 0.065 0.668 -0.094 0.677 sum 1.587 -5.494 -1.999 6.058 Atomic orbital electron populations 1.69615 1.09306 1.31459 1.37358 1.27138 0.95760 1.05478 0.90201 0.85019 0.78740 0.74899 0.79879 1.18026 1.18539 1.18402 1.19826 0.94723 0.92032 1.46191 0.91599 1.19983 0.95820 0.93192 0.89156 1.22067 0.95941 0.92123 1.34003 1.21146 0.95041 0.90296 0.84795 0.94936 1.22966 1.01622 0.96031 0.97536 1.23091 1.01176 0.97408 0.96381 1.23751 1.00912 0.83695 0.96068 1.88936 1.90206 1.17793 1.36390 0.89559 0.92001 0.91866 0.90209 0.91632 0.87621 0.90977 0.91614 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.74 12.86 21.90 0.28 -46.46 15 2 C 0.03 1.50 5.50 85.37 0.47 1.97 15 3 Si 1.00 39.80 29.56 68.60 2.03 41.83 15 4 H -0.26 -9.67 7.11 99.48 0.71 -8.97 15 5 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 7 C -0.50 -29.15 9.05 23.22 0.21 -28.94 15 8 H 0.07 3.79 7.85 -2.91 -0.02 3.77 15 9 C 0.04 2.31 9.01 21.98 0.20 2.51 15 10 C -0.42 -23.13 8.70 24.95 0.22 -22.91 15 11 C 0.14 6.68 3.81 30.22 0.12 6.80 15 12 H 0.03 1.56 7.86 -2.39 -0.02 1.55 15 13 C -0.14 -5.21 6.63 31.59 0.21 -5.00 15 14 C -0.14 -4.06 7.15 31.90 0.23 -3.83 15 15 C 0.03 0.99 7.72 72.67 0.56 1.55 15 16 O -0.41 -18.58 11.17 -148.98 -1.66 -20.25 15 17 H 0.29 14.33 8.29 -92.70 -0.77 13.56 15 18 H 0.06 3.82 7.27 -2.91 -0.02 3.80 15 19 H 0.06 3.60 8.05 -2.91 -0.02 3.58 15 20 H 0.08 2.53 8.14 -2.39 -0.02 2.51 15 21 H 0.06 2.50 7.69 -2.39 -0.02 2.48 15 22 H 0.11 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.07 2.02 8.14 -2.38 -0.02 2.00 15 24 H 0.07 1.81 8.14 -2.38 -0.02 1.79 15 25 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 Total: -1.00 -64.40 220.22 4.00 -60.39 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 1.15 Total: 12.34 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 2.21 Total: -47.85 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.28 Total: -46.46 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -1.66 Total: -20.25 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -64.40 4.00 -60.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687677777.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.066 kcal (2) G-P(sol) polarization free energy of solvation -64.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds