Wall clock time and date at job start Mon Mar 30 2020 01:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86803 * 120.00039 * 2 1 4 4 H 1.48506 * 109.46700 * 269.99327 * 3 2 1 5 5 H 1.48496 * 109.47275 * 29.98931 * 3 2 1 6 6 H 1.48501 * 109.47213 * 149.99721 * 3 2 1 7 7 C 1.40314 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99516 * 0.02562 * 7 2 1 9 9 C 1.40070 * 119.99960 * 180.02562 * 7 2 1 10 10 C 1.35035 * 119.99715 * 180.02562 * 9 7 2 11 11 C 1.50696 * 119.99996 * 180.02562 * 10 9 7 12 12 H 1.09003 * 111.01874 * 357.22620 * 11 10 9 13 13 C 1.55566 * 111.22392 * 232.92546 * 11 10 9 14 14 C 1.54383 * 102.27674 * 207.97930 * 13 11 10 15 15 O 1.43235 * 107.58532 * 21.35887 * 14 13 11 16 16 C 1.43645 * 109.97529 * 1.70714 * 15 14 13 17 17 H 0.96998 * 120.00081 * 0.02562 * 1 2 3 18 18 H 1.07996 * 120.00025 * 0.02562 * 9 7 2 19 19 H 1.08005 * 120.00195 * 359.97438 * 10 9 7 20 20 H 1.09007 * 110.84061 * 89.78099 * 13 11 10 21 21 H 1.09000 * 110.83713 * 326.17943 * 13 11 10 22 22 H 1.08995 * 109.83335 * 261.84022 * 14 13 11 23 23 H 1.09003 * 109.82742 * 140.86392 * 14 13 11 24 24 H 1.09002 * 110.30923 * 94.49115 * 16 15 14 25 25 H 1.09000 * 110.31166 * 216.56243 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4885 2.0463 -1.4002 5 1 1.4382 2.6528 0.6998 6 1 3.5384 1.4402 0.7001 7 6 2.0084 -1.2151 0.0005 8 1 1.4684 -2.1504 0.0005 9 6 3.4091 -1.2151 0.0011 10 6 4.0843 -2.3845 0.0011 11 6 5.5913 -2.3846 0.0023 12 1 5.9823 -1.3682 -0.0462 13 6 6.1553 -3.2583 -1.1547 14 6 7.5156 -3.7169 -0.5866 15 8 7.4512 -3.5982 0.8394 16 6 6.1488 -3.1392 1.2353 17 1 -0.4850 0.8400 -0.0004 18 1 3.9491 -0.2798 0.0015 19 1 3.5443 -3.3199 0.0011 20 1 6.2928 -2.6638 -2.0580 21 1 5.5069 -4.1132 -1.3466 22 1 8.3117 -3.0818 -0.9750 23 1 7.7007 -4.7549 -0.8631 24 1 5.5082 -3.9858 1.4822 25 1 6.2284 -2.4645 2.0876 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687677787.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:26 Heat of formation + Delta-G solvation = -56.632984 kcal Electronic energy + Delta-G solvation = -9244.045321 eV Core-core repulsion = 7414.908189 eV Total energy + Delta-G solvation = -1829.137132 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.68634 -34.34013 -32.69090 -30.38713 -28.60344 -24.83928 -21.74464 -20.66369 -18.53574 -17.47822 -16.00053 -15.15825 -14.70384 -14.14427 -13.18159 -12.91765 -12.61040 -12.00169 -11.40196 -11.20980 -11.00677 -10.83605 -10.23631 -10.00773 -9.91871 -9.56235 -9.33211 -9.04703 -7.87912 -6.85061 -4.31481 2.93087 3.07522 3.12065 3.63465 3.92898 4.45637 5.19059 5.38259 5.41907 5.71487 5.78301 5.97127 6.18215 6.30472 6.40174 6.59365 6.59870 6.77335 6.99327 7.30646 7.52870 7.89570 8.38162 8.45512 8.88543 9.08902 10.20302 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.086875 B = 0.010643 C = 0.010248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.225281 B = 2630.280228 C = 2731.534270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.076 3.924 3 Si 0.903 3.097 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.447 4.447 8 H 0.081 0.919 9 C 0.018 3.982 10 C -0.403 4.403 11 C -0.039 4.039 12 H 0.062 0.938 13 C -0.151 4.151 14 C 0.051 3.949 15 O -0.400 6.400 16 C 0.052 3.948 17 H 0.283 0.717 18 H 0.065 0.935 19 H 0.082 0.918 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.282 -0.571 -0.979 8.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.477 4.477 8 H 0.100 0.900 9 C -0.002 4.002 10 C -0.425 4.425 11 C -0.058 4.058 12 H 0.080 0.920 13 C -0.189 4.189 14 C -0.026 4.026 15 O -0.320 6.320 16 C -0.024 4.024 17 H 0.093 0.907 18 H 0.083 0.917 19 H 0.100 0.900 20 H 0.089 0.911 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.159 -0.490 -0.839 8.217 hybrid contribution -0.010 0.779 -0.204 0.806 sum 8.149 0.290 -1.042 8.221 Atomic orbital electron populations 1.69579 1.07951 1.29792 1.37517 1.26337 0.94915 1.01561 0.91288 0.86356 0.80744 0.80390 0.79714 1.19036 1.20436 1.17757 1.19542 0.91234 0.94412 1.42518 0.90047 1.20060 0.94074 0.94677 0.91420 1.21602 0.89977 0.96621 1.34274 1.21259 0.96462 0.96803 0.91288 0.91956 1.23245 0.95136 1.00694 0.99784 1.23068 0.98025 0.99674 0.81841 1.88288 1.34052 1.88362 1.21301 1.23622 0.82590 0.97668 0.98539 0.90695 0.91697 0.89988 0.91077 0.90991 0.92329 0.92566 0.92505 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.41 13.92 55.57 0.77 -21.63 15 2 C 0.08 2.01 5.52 -17.26 -0.10 1.91 15 3 Si 0.90 19.74 27.47 -169.99 -4.67 15.07 15 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 6 H -0.25 -5.45 6.36 56.52 0.36 -5.10 15 7 C -0.45 -12.45 9.64 -38.11 -0.37 -12.82 15 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 15 9 C 0.02 0.46 8.52 -40.03 -0.34 0.12 15 10 C -0.40 -9.57 8.63 -35.45 -0.31 -9.88 15 11 C -0.04 -0.79 3.42 -89.38 -0.31 -1.10 15 12 H 0.06 1.25 7.93 -51.93 -0.41 0.84 15 13 C -0.15 -2.61 6.50 -24.64 -0.16 -2.77 15 14 C 0.05 0.80 7.80 37.88 0.30 1.10 15 15 O -0.40 -7.44 11.36 -35.23 -0.40 -7.84 15 16 C 0.05 0.98 7.24 38.18 0.28 1.25 15 17 H 0.28 6.93 8.29 -40.82 -0.34 6.59 15 18 H 0.07 1.58 5.16 -52.49 -0.27 1.30 15 19 H 0.08 2.04 8.05 -52.48 -0.42 1.62 15 20 H 0.07 1.14 8.14 -51.93 -0.42 0.71 15 21 H 0.07 1.25 8.03 -51.93 -0.42 0.83 15 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.06 1.07 8.02 -51.93 -0.42 0.66 15 25 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 LS Contribution 216.70 15.07 3.27 3.27 Total: -1.00 -27.56 216.70 -5.26 -32.83 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -3.23 Total: 0.49 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -1.00 Total: -22.18 kcal Atomic # 7 Polarization: -22.41 SS G_CDS: 0.77 Total: -21.63 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.40 Total: -7.84 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.67 Total: 15.07 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -27.56 -5.26 -32.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687677787.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.805 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds