Wall clock time and date at job start Mon Mar 30 2020 01:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48498 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47305 * 300.00454 * 3 2 1 6 6 H 1.48507 * 109.47065 * 60.00456 * 3 2 1 7 7 C 1.38816 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99922 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.47313 * 135.87115 * 179.97438 * 9 7 2 11 11 C 1.52240 * 87.68462 * 205.94831 * 10 9 7 12 12 C 1.52668 * 122.20377 * 209.81198 * 11 10 9 13 13 N 1.48220 * 85.71579 * 209.78051 * 12 11 10 14 14 C 1.48220 * 91.07312 * 23.70211 * 13 12 11 15 15 C 1.47311 * 135.87266 * 0.02562 * 9 7 2 16 16 H 0.96997 * 119.99973 * 359.97438 * 1 2 3 17 17 H 1.09002 * 113.53089 * 320.66894 * 10 9 7 18 18 H 1.09003 * 113.52761 * 91.23273 * 10 9 7 19 19 H 1.09001 * 113.82979 * 323.98175 * 12 11 10 20 20 H 1.09002 * 113.83045 * 95.58322 * 12 11 10 21 21 H 1.00894 * 111.00230 * 270.67356 * 13 12 11 22 22 H 1.09002 * 113.83125 * 222.10051 * 14 13 12 23 23 H 1.09000 * 113.94984 * 90.50947 * 14 13 12 24 24 H 1.09001 * 113.52787 * 268.69238 * 15 9 7 25 25 H 1.08996 * 113.53400 * 39.26534 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.6851 -3.8167 -0.0015 11 6 0.3431 -4.0906 -0.6661 12 6 -0.4123 -5.4019 -0.4642 13 7 -0.9481 -5.1742 -1.8272 14 6 0.2116 -4.3172 -2.1702 15 6 -0.0914 -2.7910 -0.0005 16 1 -0.4850 0.8400 0.0004 17 1 2.5405 -4.0498 -0.6356 18 1 1.7712 -4.2444 0.9975 19 1 0.2350 -6.2754 -0.3855 20 1 -1.1687 -5.3581 0.3194 21 1 -1.7999 -4.6343 -1.7954 22 1 -0.0539 -3.4199 -2.7292 23 1 1.0488 -4.8603 -2.6087 24 1 -0.5037 -2.9319 0.9986 25 1 -0.7216 -2.1658 -0.6330 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708022316.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:22 Heat of formation + Delta-G solvation = 95.618120 kcal Electronic energy + Delta-G solvation = -9733.732808 eV Core-core repulsion = 7943.490530 eV Total energy + Delta-G solvation = -1790.242277 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.87397 -35.55452 -31.94300 -27.53922 -25.58835 -24.88145 -24.05762 -21.17434 -17.56477 -16.74945 -15.84458 -14.75209 -14.34965 -14.08443 -13.35713 -12.72225 -12.27692 -11.66409 -11.62742 -11.02100 -10.86667 -10.73409 -10.22536 -9.86800 -9.71147 -9.20546 -8.87352 -8.09145 -6.87222 -5.78950 -3.10505 3.37845 3.42912 3.45745 4.40760 4.55026 5.04129 5.07828 5.36540 5.61859 5.84066 6.01372 6.04896 6.26603 6.39560 6.41562 6.59307 6.65073 6.65945 7.13779 7.25348 7.50097 7.71496 7.95089 9.02083 9.68603 10.62827 11.39218 Molecular weight = 168.10amu Principal moments of inertia in cm(-1) A = 0.097410 B = 0.013505 C = 0.013005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.376796 B = 2072.763910 C = 2152.486763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.216 4.216 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.128 3.872 11 C -0.181 4.181 12 C 0.028 3.972 13 N -0.664 5.664 14 C 0.052 3.948 15 C 0.181 3.819 16 H 0.253 0.747 17 H 0.040 0.960 18 H 0.033 0.967 19 H 0.089 0.911 20 H 0.067 0.933 21 H 0.334 0.666 22 H 0.073 0.927 23 H 0.089 0.911 24 H 0.027 0.973 25 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -6.913 -1.314 7.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.343 4.343 8 H 0.100 0.900 9 N -0.334 5.334 10 C 0.001 3.999 11 C -0.183 4.183 12 C -0.102 4.102 13 N -0.290 5.290 14 C -0.078 4.078 15 C 0.055 3.945 16 H 0.063 0.937 17 H 0.058 0.942 18 H 0.051 0.949 19 H 0.108 0.892 20 H 0.086 0.914 21 H 0.148 0.852 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.045 0.955 25 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.213 -7.265 -1.758 7.478 hybrid contribution 0.389 1.863 0.778 2.056 sum 0.176 -5.403 -0.980 5.494 Atomic orbital electron populations 1.69830 1.05058 1.25255 1.56819 1.24805 0.95722 0.97578 1.02567 0.86014 0.78724 0.83571 0.77287 1.20418 1.21652 1.21719 1.19013 0.90195 0.81496 1.43622 0.90037 1.45603 1.02469 0.99375 1.85972 1.22196 0.94610 0.86531 0.96603 1.24715 1.00100 0.96635 0.96860 1.23366 0.98051 0.97333 0.91489 1.65151 1.04546 1.40443 1.18821 1.23133 0.94135 0.95854 0.94689 1.21706 0.88963 0.87646 0.96198 0.93697 0.94172 0.94913 0.89228 0.91412 0.85181 0.90879 0.89264 0.95519 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.73 11.52 55.49 0.64 -27.09 15 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 15 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 7 C -0.22 -6.19 10.74 -15.06 -0.16 -6.36 15 8 H 0.08 2.26 7.83 -52.49 -0.41 1.84 15 9 N -0.61 -16.07 3.79 -184.27 -0.70 -16.77 15 10 C 0.13 2.71 8.50 -7.53 -0.06 2.65 15 11 C -0.18 -3.48 1.45 -155.82 -0.23 -3.70 15 12 C 0.03 0.45 8.74 -3.27 -0.03 0.42 15 13 N -0.66 -10.70 8.54 -123.39 -1.05 -11.75 15 14 C 0.05 0.91 8.73 -3.26 -0.03 0.89 15 15 C 0.18 4.32 7.19 -7.47 -0.05 4.27 15 16 H 0.25 7.34 8.31 -40.82 -0.34 7.00 15 17 H 0.04 0.82 8.14 -51.93 -0.42 0.39 15 18 H 0.03 0.67 8.14 -51.93 -0.42 0.25 15 19 H 0.09 1.30 8.14 -51.93 -0.42 0.87 15 20 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.33 5.14 8.90 -39.30 -0.35 4.79 15 22 H 0.07 1.38 8.14 -51.93 -0.42 0.95 15 23 H 0.09 1.48 8.14 -51.93 -0.42 1.05 15 24 H 0.03 0.66 8.14 -51.93 -0.42 0.23 15 25 H 0.07 1.85 7.17 -51.93 -0.37 1.48 15 LS Contribution 214.78 15.07 3.24 3.24 Total: -1.00 -30.65 214.78 -6.79 -37.44 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -3.23 Total: -0.18 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -0.66 Total: -2.24 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -1.11 Total: -55.61 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -30.65 -6.79 -37.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708022316.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.055 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds