Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99899 * 2 1 4 4 H 1.48500 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47136 * 300.00424 * 3 2 1 6 6 H 1.48506 * 109.46823 * 60.00389 * 3 2 1 7 7 C 1.38811 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99636 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00154 * 180.02562 * 9 7 2 11 11 C 1.53000 * 120.25053 * 108.81126 * 10 9 7 12 12 C 1.53004 * 60.65592 * 112.13715 * 11 10 9 13 13 H 1.09000 * 120.24504 * 247.86394 * 12 11 10 14 14 C 1.54481 * 118.06319 * 90.40907 * 12 11 10 15 15 O 1.44422 * 104.80535 * 321.13142 * 14 12 11 16 16 C 1.44433 * 105.27452 * 319.49061 * 15 14 12 17 17 H 0.96996 * 119.99855 * 359.97438 * 1 2 3 18 18 H 0.97002 * 119.99646 * 0.02562 * 9 7 2 19 19 H 1.08999 * 117.43652 * 219.81397 * 11 10 9 20 20 H 1.09002 * 117.43274 * 4.45865 * 11 10 9 21 21 H 1.08995 * 110.37274 * 79.96530 * 14 12 11 22 22 H 1.09001 * 110.36427 * 202.30110 * 14 12 11 23 23 H 1.08997 * 110.37115 * 281.68143 * 16 15 14 24 24 H 1.08995 * 110.37312 * 159.34452 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 2.0745 -4.5373 1.2505 12 6 1.3415 -5.0256 -0.0006 13 1 0.2552 -5.1156 -0.0005 14 6 2.1349 -5.8647 -1.0267 15 8 3.4428 -5.2537 -1.0705 16 6 3.1997 -3.8307 -1.0266 17 1 -0.4850 0.8400 0.0004 18 1 0.3556 -2.3880 -0.0005 19 1 3.0131 -5.0287 1.5066 20 1 1.4659 -4.2187 2.0969 21 1 2.2105 -6.8996 -0.6932 22 1 1.6596 -5.8145 -2.0063 23 1 2.8878 -3.4686 -2.0063 24 1 4.0933 -3.3032 -0.6932 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718098316.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = -21.076228 kcal Electronic energy + Delta-G solvation = -9718.832856 eV Core-core repulsion = 7825.811670 eV Total energy + Delta-G solvation = -1893.021186 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.15073 -36.47309 -34.70723 -31.96091 -29.06468 -26.57730 -25.93808 -21.61831 -20.73545 -19.13465 -17.82930 -16.76813 -16.24015 -15.96786 -15.40073 -14.87716 -13.81954 -13.79972 -13.26881 -12.98623 -12.85616 -12.29582 -12.16390 -11.99687 -11.64681 -10.93663 -10.91756 -10.35491 -9.02687 -8.00970 -5.31463 1.47528 1.47825 1.58526 2.49434 2.71190 2.97851 3.35410 3.50396 3.83569 3.90795 4.20527 4.32464 4.57046 4.77188 4.79949 4.81063 4.92870 5.06574 5.24193 5.47677 5.76885 6.21053 7.25900 7.96634 8.21325 9.22371 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.083781 B = 0.013205 C = 0.012336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.123950 B = 2119.869605 C = 2269.252658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.072 4.072 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.695 5.695 10 C 0.074 3.926 11 C -0.157 4.157 12 C -0.211 4.211 13 H 0.121 0.879 14 C 0.077 3.923 15 O -0.386 6.386 16 C 0.087 3.913 17 H 0.253 0.747 18 H 0.377 0.623 19 H 0.099 0.901 20 H 0.089 0.911 21 H 0.119 0.881 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 -8.875 -0.998 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.333 5.333 10 C -0.019 4.019 11 C -0.198 4.198 12 C -0.230 4.230 13 H 0.139 0.861 14 C 0.001 3.999 15 O -0.304 6.304 16 C 0.008 3.992 17 H 0.062 0.938 18 H 0.210 0.790 19 H 0.117 0.883 20 H 0.107 0.893 21 H 0.137 0.863 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.628 -8.832 -1.053 10.026 hybrid contribution -0.613 1.216 0.139 1.369 sum 4.015 -7.615 -0.915 8.657 Atomic orbital electron populations 1.69822 1.06734 1.26321 1.59102 1.25613 0.96408 1.01219 1.03175 0.85024 0.78347 0.79389 0.76703 1.18768 1.21853 1.22009 1.19627 0.91632 0.84421 1.41638 0.90177 1.41641 1.04813 0.99411 1.87458 1.21951 0.96885 0.84346 0.98694 1.23312 1.01743 1.02689 0.92080 1.24384 1.00043 0.97989 1.00579 0.86114 1.23021 0.82016 0.97766 0.97081 1.89069 1.27823 1.18216 1.95301 1.22788 0.97613 0.81680 0.97077 0.93792 0.78977 0.88263 0.89264 0.86325 0.90650 0.91988 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.92 13.06 21.65 0.28 -58.64 14 2 C -0.07 -4.08 5.50 84.86 0.47 -3.62 14 3 Si 0.98 45.61 29.55 68.60 2.03 47.64 14 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 14 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 14 6 H -0.29 -13.70 7.11 99.48 0.71 -12.99 14 7 C -0.24 -13.36 9.64 84.03 0.81 -12.55 14 8 H 0.08 4.24 7.71 -2.91 -0.02 4.22 14 9 N -0.70 -35.63 5.73 -298.77 -1.71 -37.34 14 10 C 0.07 3.05 3.46 4.62 0.02 3.07 14 11 C -0.16 -5.62 9.88 30.60 0.30 -5.32 14 12 C -0.21 -6.96 7.25 -9.77 -0.07 -7.03 14 13 H 0.12 3.81 8.14 -2.39 -0.02 3.80 14 14 C 0.08 2.16 7.53 72.49 0.55 2.71 14 15 O -0.39 -12.97 11.31 -148.98 -1.69 -14.65 14 16 C 0.09 3.25 6.93 72.48 0.50 3.75 14 17 H 0.25 14.85 8.31 -92.71 -0.77 14.08 14 18 H 0.38 20.69 8.03 -92.71 -0.74 19.95 14 19 H 0.10 3.24 8.06 -2.39 -0.02 3.22 14 20 H 0.09 3.28 8.14 -2.39 -0.02 3.26 14 21 H 0.12 2.59 8.14 -2.39 -0.02 2.57 14 22 H 0.08 1.94 8.14 -2.39 -0.02 1.92 14 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 14 24 H 0.09 3.34 8.14 -2.39 -0.02 3.32 14 Total: -1.00 -61.87 212.13 1.93 -59.94 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.45 Total: 22.04 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 2.57 Total: -18.98 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -1.43 Total: -95.98 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.69 Total: -14.65 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -61.87 1.93 -59.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718098316.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.860 kcal (2) G-P(sol) polarization free energy of solvation -61.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds