Wall clock time and date at job start Mon Mar 30 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47512 * 5.28213 * 3 2 1 5 5 H 1.48508 * 109.47127 * 125.28124 * 3 2 1 6 6 H 1.48495 * 109.47289 * 245.27790 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00116 * 345.68521 * 7 2 1 9 9 N 1.36935 * 119.99633 * 165.68026 * 7 2 1 10 10 C 1.47020 * 125.64918 * 348.93623 * 9 7 2 11 11 C 1.54334 * 107.26790 * 181.02250 * 10 9 7 12 12 C 1.55154 * 102.94217 * 22.19151 * 11 10 9 13 13 H 1.09007 * 111.00283 * 82.57376 * 12 11 10 14 14 C 1.50697 * 111.00252 * 206.38580 * 12 11 10 15 15 O 1.20763 * 119.99830 * 240.00240 * 14 12 11 16 16 C 1.47431 * 125.64442 * 168.63009 * 9 7 2 17 17 H 0.97003 * 119.99939 * 174.92863 * 1 2 3 18 18 H 1.09000 * 109.88648 * 300.43561 * 10 9 7 19 19 H 1.08994 * 109.88344 * 61.45505 * 10 9 7 20 20 H 1.09000 * 110.71694 * 140.55842 * 11 10 9 21 21 H 1.09001 * 110.71400 * 263.65148 * 11 10 9 22 22 H 1.07997 * 120.00214 * 60.00270 * 14 12 11 23 23 H 1.08998 * 110.35883 * 274.74557 * 16 9 7 24 24 H 1.09000 * 110.36735 * 37.06529 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2903 2.7435 0.1289 5 1 3.1980 1.6421 1.1430 6 1 3.0047 1.7537 -1.2717 7 6 2.0102 -1.2022 0.0005 8 1 1.4954 -2.1228 0.2322 9 7 3.3477 -1.2206 -0.2928 10 6 4.1196 -0.0973 -0.8439 11 6 5.5709 -0.5875 -1.0323 12 6 5.4101 -2.1288 -1.1076 13 1 5.1300 -2.4438 -2.1129 14 6 6.6680 -2.8258 -0.6571 15 8 7.2563 -3.5593 -1.4149 16 6 4.2533 -2.3683 -0.1022 17 1 -0.4850 -0.8368 -0.0743 18 1 3.7023 0.2032 -1.8050 19 1 4.0970 0.7435 -0.1508 20 1 5.9923 -0.1979 -1.9590 21 1 6.1877 -0.3025 -0.1800 22 1 7.0434 -2.6692 0.3433 23 1 4.6330 -2.3862 0.9193 24 1 3.7378 -3.3007 -0.3326 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719103167.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:44 Heat of formation + Delta-G solvation = -4.074956 kcal Electronic energy + Delta-G solvation = -9723.662378 eV Core-core repulsion = 7831.378422 eV Total energy + Delta-G solvation = -1892.283956 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.24795 -37.35237 -32.82337 -30.24681 -28.81576 -24.70591 -22.54406 -20.75373 -20.11042 -17.56252 -16.04239 -15.85192 -14.93944 -14.03059 -13.86572 -13.47545 -12.80028 -12.49805 -12.23665 -11.50002 -11.14025 -10.75974 -10.67894 -10.08115 -9.56567 -9.32249 -8.98598 -8.75494 -7.09092 -6.34633 -3.27157 2.04643 3.39425 3.46671 3.69288 4.38461 4.59717 4.92813 5.07291 5.09725 5.32004 5.44813 5.68712 5.88034 5.97155 6.05386 6.29974 6.42278 6.57002 6.68776 7.46704 7.61343 8.29763 9.00151 9.50999 10.17346 11.16140 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.086090 B = 0.014767 C = 0.013055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.163495 B = 1895.669002 C = 2144.273911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.021 4.021 3 Si 1.072 2.928 4 H -0.301 1.301 5 H -0.297 1.297 6 H -0.286 1.286 7 C -0.325 4.325 8 H 0.079 0.921 9 N -0.612 5.612 10 C 0.109 3.891 11 C -0.113 4.113 12 C -0.177 4.177 13 H 0.099 0.901 14 C 0.362 3.638 15 O -0.473 6.473 16 C 0.150 3.850 17 H 0.262 0.738 18 H 0.048 0.952 19 H 0.033 0.967 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.031 0.969 24 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.337 -0.897 -0.324 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.221 4.221 3 Si 0.906 3.094 4 H -0.229 1.229 5 H -0.226 1.226 6 H -0.213 1.213 7 C -0.452 4.452 8 H 0.097 0.903 9 N -0.340 5.340 10 C -0.015 4.015 11 C -0.152 4.152 12 C -0.198 4.198 13 H 0.117 0.883 14 C 0.218 3.782 15 O -0.344 6.344 16 C 0.023 3.977 17 H 0.072 0.928 18 H 0.066 0.934 19 H 0.050 0.950 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.110 0.890 23 H 0.048 0.952 24 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.339 0.333 -0.653 11.363 hybrid contribution 0.104 -1.618 0.060 1.622 sum 11.443 -1.285 -0.593 11.530 Atomic orbital electron populations 1.70894 1.05715 1.29306 1.50944 1.25894 0.96488 1.00993 0.98692 0.83811 0.73162 0.76136 0.76272 1.22945 1.22595 1.21342 1.20184 0.81548 0.96187 1.47276 0.90333 1.44836 1.05808 1.08520 1.74858 1.22028 0.90012 0.91929 0.97541 1.22513 0.98097 0.92601 1.01948 1.23434 0.96290 0.97295 1.02741 0.88313 1.25993 0.84074 0.76299 0.91818 1.90361 1.56535 1.30242 1.57308 1.21477 0.88972 0.92593 0.94623 0.92813 0.93375 0.95000 0.90772 0.90896 0.88963 0.95176 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.15 13.70 55.49 0.76 -28.39 14 2 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 14 3 Si 1.07 26.50 24.53 -169.99 -4.17 22.33 14 4 H -0.30 -7.63 7.11 56.52 0.40 -7.23 14 5 H -0.30 -7.02 6.84 56.52 0.39 -6.63 14 6 H -0.29 -6.43 5.43 56.52 0.31 -6.12 14 7 C -0.32 -9.28 10.56 -15.06 -0.16 -9.44 14 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 14 9 N -0.61 -14.81 3.32 -169.93 -0.56 -15.38 14 10 C 0.11 2.32 4.62 -3.06 -0.01 2.30 14 11 C -0.11 -1.78 6.40 -24.89 -0.16 -1.93 14 12 C -0.18 -2.81 3.52 -89.51 -0.32 -3.12 14 13 H 0.10 1.65 8.14 -51.93 -0.42 1.23 14 14 C 0.36 4.91 10.53 36.00 0.38 5.29 14 15 O -0.47 -7.90 17.92 6.00 0.11 -7.79 14 16 C 0.15 2.87 6.69 -2.41 -0.02 2.85 14 17 H 0.26 8.14 8.73 -40.82 -0.36 7.78 14 18 H 0.05 1.07 6.78 -51.93 -0.35 0.72 14 19 H 0.03 0.71 3.81 -51.93 -0.20 0.51 14 20 H 0.07 1.01 8.14 -51.93 -0.42 0.59 14 21 H 0.07 0.97 8.04 -51.93 -0.42 0.56 14 22 H 0.09 0.94 8.06 -52.49 -0.42 0.52 14 23 H 0.03 0.54 8.04 -51.93 -0.42 0.12 14 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 14 LS Contribution 202.61 15.07 3.05 3.05 Total: -1.00 -32.48 202.61 -3.95 -36.43 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: -2.76 Total: -5.47 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.38 Total: -4.78 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.20 Total: -43.77 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.11 Total: -7.79 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -4.17 Total: 22.33 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -32.48 -3.95 -36.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719103167.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.355 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds