Wall clock time and date at job start Mon Mar 30 2020 02:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86792 * 119.99787 * 2 1 4 4 H 1.48501 * 109.47512 * 5.28213 * 3 2 1 5 5 H 1.48508 * 109.47127 * 125.28124 * 3 2 1 6 6 H 1.48495 * 109.47289 * 245.27790 * 3 2 1 7 7 C 1.38813 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00116 * 345.68521 * 7 2 1 9 9 N 1.36935 * 119.99633 * 165.68026 * 7 2 1 10 10 C 1.47020 * 125.64918 * 348.93623 * 9 7 2 11 11 C 1.54334 * 107.26790 * 181.02250 * 10 9 7 12 12 C 1.55154 * 102.94217 * 22.19151 * 11 10 9 13 13 H 1.09007 * 111.00283 * 82.57376 * 12 11 10 14 14 C 1.50697 * 111.00252 * 206.38580 * 12 11 10 15 15 O 1.20763 * 119.99830 * 240.00240 * 14 12 11 16 16 C 1.47431 * 125.64442 * 168.63009 * 9 7 2 17 17 H 0.97003 * 119.99939 * 174.92863 * 1 2 3 18 18 H 1.09000 * 109.88648 * 300.43561 * 10 9 7 19 19 H 1.08994 * 109.88344 * 61.45505 * 10 9 7 20 20 H 1.09000 * 110.71694 * 140.55842 * 11 10 9 21 21 H 1.09001 * 110.71400 * 263.65148 * 11 10 9 22 22 H 1.07997 * 120.00214 * 60.00270 * 14 12 11 23 23 H 1.08998 * 110.35883 * 274.74557 * 16 9 7 24 24 H 1.09000 * 110.36735 * 37.06529 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2903 2.7435 0.1289 5 1 3.1980 1.6421 1.1430 6 1 3.0047 1.7537 -1.2717 7 6 2.0102 -1.2022 0.0005 8 1 1.4954 -2.1228 0.2322 9 7 3.3477 -1.2206 -0.2928 10 6 4.1196 -0.0973 -0.8439 11 6 5.5709 -0.5875 -1.0323 12 6 5.4101 -2.1288 -1.1076 13 1 5.1300 -2.4438 -2.1129 14 6 6.6680 -2.8258 -0.6571 15 8 7.2563 -3.5593 -1.4149 16 6 4.2533 -2.3683 -0.1022 17 1 -0.4850 -0.8368 -0.0743 18 1 3.7023 0.2032 -1.8050 19 1 4.0970 0.7435 -0.1508 20 1 5.9923 -0.1979 -1.9590 21 1 6.1877 -0.3025 -0.1800 22 1 7.0434 -2.6692 0.3433 23 1 4.6330 -2.3862 0.9193 24 1 3.7378 -3.3007 -0.3326 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719103167.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:43 Heat of formation + Delta-G solvation = -28.266402 kcal Electronic energy + Delta-G solvation = -9724.711398 eV Core-core repulsion = 7831.378422 eV Total energy + Delta-G solvation = -1893.332975 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.50893 -38.85347 -34.84509 -32.06337 -30.31241 -26.52546 -23.93303 -22.53156 -21.39690 -19.62199 -17.43110 -17.31004 -16.45667 -15.60519 -15.40893 -15.15036 -14.44320 -13.97220 -13.88216 -13.14923 -13.04623 -12.32081 -12.06758 -11.70951 -11.39441 -11.08499 -10.77876 -10.52405 -9.10700 -8.66946 -5.49958 0.97694 1.42852 1.52890 1.75298 2.57522 3.06119 3.20891 3.52985 3.74284 3.83496 3.99273 4.33451 4.52582 4.69584 4.78207 4.86568 4.91747 5.15157 5.25062 5.53016 6.08607 6.41737 6.80780 7.42643 8.06679 8.86107 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.086090 B = 0.014767 C = 0.013055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.163495 B = 1895.669002 C = 2144.273911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.082 4.082 3 Si 1.113 2.887 4 H -0.315 1.315 5 H -0.275 1.275 6 H -0.251 1.251 7 C -0.315 4.315 8 H 0.044 0.956 9 N -0.637 5.637 10 C 0.095 3.905 11 C -0.100 4.100 12 C -0.169 4.169 13 H 0.082 0.918 14 C 0.381 3.619 15 O -0.504 6.504 16 C 0.142 3.858 17 H 0.246 0.754 18 H 0.032 0.968 19 H 0.034 0.966 20 H 0.099 0.901 21 H 0.108 0.892 22 H 0.147 0.853 23 H 0.056 0.944 24 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.519 -0.177 -0.057 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.275 4.275 3 Si 0.940 3.060 4 H -0.245 1.245 5 H -0.202 1.202 6 H -0.176 1.176 7 C -0.444 4.444 8 H 0.062 0.938 9 N -0.365 5.365 10 C -0.029 4.029 11 C -0.138 4.138 12 C -0.189 4.189 13 H 0.100 0.900 14 C 0.239 3.761 15 O -0.377 6.377 16 C 0.017 3.983 17 H 0.055 0.945 18 H 0.050 0.950 19 H 0.051 0.949 20 H 0.118 0.882 21 H 0.127 0.873 22 H 0.163 0.837 23 H 0.074 0.926 24 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.576 1.013 -0.392 14.616 hybrid contribution -0.915 -1.976 -0.020 2.178 sum 13.661 -0.964 -0.412 13.701 Atomic orbital electron populations 1.71007 1.07150 1.28430 1.54410 1.27287 0.96476 1.04851 0.98843 0.83369 0.72543 0.71462 0.78645 1.24471 1.20229 1.17570 1.20080 0.84116 0.94801 1.45372 0.93792 1.44934 1.05067 1.11283 1.75242 1.22216 0.93041 0.91284 0.96314 1.22523 0.94725 0.91641 1.04897 1.23343 0.96400 0.98279 1.00927 0.89969 1.26290 0.82229 0.74504 0.93050 1.90382 1.57214 1.31492 1.58633 1.21666 0.89346 0.90296 0.96966 0.94489 0.95020 0.94876 0.88248 0.87320 0.83661 0.92602 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.86 13.70 21.65 0.30 -62.56 14 2 C -0.08 -4.93 5.50 84.86 0.47 -4.47 14 3 Si 1.11 52.73 24.53 68.60 1.68 54.41 14 4 H -0.32 -15.55 7.11 99.48 0.71 -14.85 14 5 H -0.28 -11.93 6.84 99.48 0.68 -11.25 14 6 H -0.25 -10.37 5.43 99.48 0.54 -9.83 14 7 C -0.32 -18.35 10.56 84.03 0.89 -17.46 14 8 H 0.04 2.78 8.06 -2.91 -0.02 2.75 14 9 N -0.64 -30.05 3.32 -691.55 -2.30 -32.35 14 10 C 0.10 3.74 4.62 86.73 0.40 4.14 14 11 C -0.10 -2.63 6.40 31.79 0.20 -2.42 14 12 C -0.17 -4.75 3.52 -10.07 -0.04 -4.79 14 13 H 0.08 2.57 8.14 -2.38 -0.02 2.55 14 14 C 0.38 8.50 10.53 71.23 0.75 9.25 14 15 O -0.50 -15.06 17.92 -1.46 -0.03 -15.08 14 16 C 0.14 5.14 6.69 86.93 0.58 5.72 14 17 H 0.25 16.14 8.73 -92.71 -0.81 15.33 14 18 H 0.03 1.34 6.78 -2.39 -0.02 1.32 14 19 H 0.03 1.33 3.81 -2.39 -0.01 1.32 14 20 H 0.10 2.17 8.14 -2.39 -0.02 2.15 14 21 H 0.11 2.15 8.04 -2.39 -0.02 2.13 14 22 H 0.15 1.93 8.06 -2.91 -0.02 1.90 14 23 H 0.06 1.77 8.04 -2.39 -0.02 1.76 14 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 14 Total: -1.00 -72.88 202.61 3.86 -69.02 By element: Atomic # 1 Polarization: -4.36 SS G_CDS: 0.95 Total: -3.41 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 3.25 Total: -10.03 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -2.00 Total: -94.91 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.03 Total: -15.08 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 1.68 Total: 54.41 kcal Total: -72.88 3.86 -69.02 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719103167.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.755 kcal (2) G-P(sol) polarization free energy of solvation -72.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds