Wall clock time and date at job start Mon Mar 30 2020 01:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 112.85110 * 2 1 4 4 O 1.21432 * 120.00033 * 228.79943 * 3 2 1 5 5 C 1.41022 * 120.00126 * 48.79872 * 3 2 1 6 6 H 1.08004 * 120.00059 * 0.02562 * 5 3 2 7 7 C 1.40460 * 120.00382 * 179.97438 * 5 3 2 8 8 N 1.30524 * 119.99686 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00412 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46798 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46916 * 120.00183 * 9 7 5 12 12 H 1.48496 * 109.47370 * 239.99906 * 9 7 5 13 13 C 1.53782 * 113.61734 * 228.79873 * 2 1 3 14 14 C 1.53781 * 87.08260 * 220.02231 * 13 2 1 15 15 C 1.53786 * 87.17350 * 25.39213 * 14 13 2 16 16 H 1.08996 * 109.47659 * 191.19490 * 1 2 3 17 17 H 1.09003 * 109.47607 * 311.20386 * 1 2 3 18 18 H 1.09003 * 109.47085 * 71.19884 * 1 2 3 19 19 H 0.96998 * 120.00192 * 179.97438 * 8 7 5 20 20 H 1.09001 * 113.61250 * 105.47049 * 13 2 1 21 21 H 1.08997 * 113.61225 * 334.56890 * 13 2 1 22 22 H 1.09002 * 113.61445 * 139.98212 * 14 13 2 23 23 H 1.09002 * 113.61408 * 270.79943 * 14 13 2 24 24 H 1.08993 * 113.61491 * 89.15923 * 15 14 13 25 25 H 1.09000 * 113.61138 * 220.06261 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9893 1.6792 -0.7913 5 6 1.6477 2.3509 0.9189 6 1 0.8705 2.0924 1.6229 7 6 2.1935 3.6451 0.9193 8 7 3.1338 3.9571 0.0695 9 14 1.5737 4.9199 2.1360 10 1 0.5135 4.3195 2.9849 11 1 2.6978 5.3722 2.9946 12 1 1.0177 6.0812 1.3961 13 6 2.1460 -0.9281 -1.0601 14 6 3.1923 -1.3136 -0.0011 15 6 2.1479 -0.9296 1.0604 16 1 -0.3634 -1.0080 0.1995 17 1 -0.3634 0.6770 0.7732 18 1 -0.3633 0.3312 -0.9729 19 1 3.5105 4.8509 0.0694 20 1 2.5650 -0.3971 -1.9149 21 1 1.4945 -1.7523 -1.3505 22 1 3.4443 -2.3741 -0.0021 23 1 4.0717 -0.6696 -0.0014 24 1 1.4969 -1.7542 1.3508 25 1 2.5685 -0.3998 1.9151 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720763109.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:33 Heat of formation + Delta-G solvation = -56.079283 kcal Electronic energy + Delta-G solvation = -9797.092682 eV Core-core repulsion = 7967.979561 eV Total energy + Delta-G solvation = -1829.113121 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.64495 -37.30932 -34.67961 -31.20043 -28.63468 -26.33640 -24.56217 -22.51165 -19.70180 -17.95842 -17.06654 -16.13829 -15.66205 -15.12731 -14.46505 -14.21576 -13.68638 -13.34819 -13.04230 -12.88431 -12.68156 -12.36324 -12.06979 -11.90815 -11.58617 -11.02701 -10.85753 -10.84261 -9.42217 -8.25595 -7.05109 1.32719 1.36495 1.54424 2.20931 2.21327 3.36774 3.88749 3.95829 4.03340 4.17643 4.59858 4.80345 4.87097 4.90589 5.00714 5.06074 5.10754 5.20375 5.35545 5.38759 5.60458 5.77284 6.03670 6.75964 6.90061 8.33026 8.56395 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.069473 B = 0.016386 C = 0.015028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.935229 B = 1708.370999 C = 1862.695522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.138 4.138 3 C 0.363 3.637 4 O -0.596 6.596 5 C -0.555 4.555 6 H 0.085 0.915 7 C 0.024 3.976 8 N -0.794 5.794 9 Si 0.990 3.010 10 H -0.246 1.246 11 H -0.266 1.266 12 H -0.265 1.265 13 C -0.124 4.124 14 C -0.132 4.132 15 C -0.110 4.110 16 H 0.078 0.922 17 H 0.053 0.947 18 H 0.040 0.960 19 H 0.279 0.721 20 H 0.035 0.965 21 H 0.103 0.897 22 H 0.091 0.909 23 H 0.042 0.958 24 H 0.111 0.889 25 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 -5.503 4.025 8.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.139 4.139 3 C 0.261 3.739 4 O -0.489 6.489 5 C -0.586 4.586 6 H 0.103 0.897 7 C -0.194 4.194 8 N -0.424 5.424 9 Si 0.809 3.191 10 H -0.168 1.168 11 H -0.190 1.190 12 H -0.190 1.190 13 C -0.161 4.161 14 C -0.170 4.170 15 C -0.147 4.147 16 H 0.097 0.903 17 H 0.072 0.928 18 H 0.059 0.941 19 H 0.089 0.911 20 H 0.054 0.946 21 H 0.122 0.878 22 H 0.109 0.891 23 H 0.061 0.939 24 H 0.129 0.871 25 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.454 -5.304 3.554 7.784 hybrid contribution 0.080 0.845 0.207 0.874 sum -4.374 -4.459 3.761 7.291 Atomic orbital electron populations 1.21526 0.92512 1.02002 1.01016 1.22471 0.97189 0.95892 0.98384 1.19849 0.82477 0.87825 0.83790 1.90334 1.33818 1.82144 1.42597 1.21283 1.21281 0.97230 1.18850 0.89703 1.27272 0.93188 1.01925 0.97047 1.70115 1.20126 1.20751 1.31402 0.85084 0.79374 0.76828 0.77807 1.16841 1.19042 1.18976 1.22810 0.98383 0.98519 0.96437 1.22623 0.96412 1.00824 0.97101 1.22864 0.97972 0.98273 0.95611 0.90316 0.92771 0.94091 0.91065 0.94596 0.87846 0.89055 0.93929 0.87106 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 9.05 71.98 0.65 -3.57 15 2 C -0.14 -6.16 1.20 -52.34 -0.06 -6.22 15 3 C 0.36 21.11 5.84 26.37 0.15 21.26 15 4 O -0.60 -40.11 14.28 -3.50 -0.05 -40.16 15 5 C -0.56 -31.54 8.69 23.49 0.20 -31.34 15 6 H 0.08 4.39 6.90 -2.91 -0.02 4.37 15 7 C 0.02 1.33 5.50 85.43 0.47 1.80 15 8 N -0.79 -48.21 11.72 21.91 0.26 -47.95 15 9 Si 0.99 40.38 29.56 68.60 2.03 42.41 15 10 H -0.25 -9.31 7.11 99.48 0.71 -8.60 15 11 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 12 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 13 C -0.12 -5.04 7.02 31.12 0.22 -4.82 15 14 C -0.13 -5.09 7.73 31.12 0.24 -4.85 15 15 C -0.11 -4.14 7.23 31.18 0.23 -3.91 15 16 H 0.08 2.28 7.95 -2.39 -0.02 2.26 15 17 H 0.05 2.06 6.82 -2.39 -0.02 2.04 15 18 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 19 H 0.28 15.14 8.29 -92.71 -0.77 14.38 15 20 H 0.04 1.69 7.43 -2.39 -0.02 1.67 15 21 H 0.10 3.32 8.10 -2.39 -0.02 3.30 15 22 H 0.09 2.75 8.14 -2.39 -0.02 2.73 15 23 H 0.04 1.94 8.08 -2.39 -0.02 1.92 15 24 H 0.11 3.23 7.97 -2.39 -0.02 3.21 15 25 H 0.05 1.93 8.10 -2.39 -0.02 1.91 15 Total: -1.00 -71.46 215.06 5.50 -65.96 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.16 Total: 11.39 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 2.10 Total: -31.65 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.26 Total: -47.95 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.05 Total: -40.16 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -71.46 5.50 -65.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720763109.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.884 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds