Wall clock time and date at job start Mon Mar 30 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99721 * 2 1 4 4 H 1.48499 * 109.47038 * 266.63837 * 3 2 1 5 5 H 1.48496 * 109.47373 * 26.64488 * 3 2 1 6 6 H 1.48508 * 109.47006 * 146.64224 * 3 2 1 7 7 C 1.38816 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99987 * 337.34152 * 7 2 1 9 9 N 1.36933 * 119.99946 * 157.34795 * 7 2 1 10 10 C 1.47424 * 125.64825 * 157.75647 * 9 7 2 11 11 C 1.54919 * 104.83072 * 204.15854 * 10 9 7 12 12 C 1.55159 * 101.57928 * 322.98828 * 11 10 9 13 13 C 1.47026 * 125.64629 * 337.78709 * 9 7 2 14 14 H 1.08994 * 109.88300 * 59.49448 * 13 9 7 15 15 C 1.50693 * 110.01414 * 298.39914 * 13 9 7 16 16 O 1.20765 * 119.99884 * 2.11339 * 15 13 9 17 17 H 0.96993 * 120.00245 * 359.97438 * 1 2 3 18 18 H 1.08999 * 110.36880 * 322.99313 * 10 9 7 19 19 H 1.08993 * 110.37088 * 85.32129 * 10 9 7 20 20 H 1.08993 * 111.00273 * 204.91477 * 11 10 9 21 21 H 1.08999 * 111.00390 * 81.05817 * 11 10 9 22 22 H 1.08997 * 110.72076 * 277.13627 * 12 11 10 23 23 H 1.09001 * 110.71892 * 153.86386 * 12 11 10 24 24 H 1.07997 * 120.00310 * 182.11365 * 15 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5687 2.0054 -1.3977 5 1 1.4139 2.6721 0.6278 6 1 3.5104 1.4618 0.7699 7 6 2.0103 -1.2021 0.0005 8 1 1.5329 -2.1012 0.3613 9 7 3.3004 -1.2480 -0.4562 10 6 4.2982 -2.2766 -0.1103 11 6 5.6690 -1.5889 -0.3293 12 6 5.3843 -0.7190 -1.5821 13 6 3.9200 -0.2792 -1.3722 14 1 3.8918 0.7175 -0.9321 15 6 3.1913 -0.2777 -2.6912 16 8 2.2228 -0.9821 -2.8468 17 1 -0.4850 0.8400 0.0004 18 1 4.1872 -2.5779 0.9314 19 1 4.1974 -3.1396 -0.7684 20 1 6.4470 -2.3245 -0.5330 21 1 5.9353 -0.9673 0.5256 22 1 5.4828 -1.3102 -2.4926 23 1 6.0467 0.1463 -1.6094 24 1 3.5351 0.3534 -3.4974 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885226067.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:32 Heat of formation + Delta-G solvation = -21.484694 kcal Electronic energy + Delta-G solvation = -10146.799439 eV Core-core repulsion = 8253.760541 eV Total energy + Delta-G solvation = -1893.038898 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.57770 -38.21420 -34.59198 -31.81452 -30.70534 -26.43731 -24.23616 -22.07008 -21.33273 -18.80890 -18.01581 -17.09377 -16.01943 -15.58684 -15.38771 -15.16419 -14.33417 -13.72420 -13.29849 -13.14352 -12.92643 -12.58188 -12.11506 -11.95180 -11.78223 -11.22413 -10.71308 -10.41521 -8.98989 -8.16676 -5.41835 1.14961 1.30400 1.33922 1.44537 2.39215 2.94805 3.37309 3.50148 3.87912 4.03365 4.19564 4.40021 4.60544 4.80720 4.97230 5.05115 5.12667 5.19743 5.43929 5.70872 6.10883 6.64990 6.87026 7.55620 8.10942 9.05803 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.048920 B = 0.024060 C = 0.023500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.221915 B = 1163.484992 C = 1191.211402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.039 4.039 3 Si 0.938 3.062 4 H -0.260 1.260 5 H -0.309 1.309 6 H -0.254 1.254 7 C -0.221 4.221 8 H 0.040 0.960 9 N -0.614 5.614 10 C 0.117 3.883 11 C -0.119 4.119 12 C -0.104 4.104 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.311 3.689 16 O -0.475 6.475 17 H 0.259 0.741 18 H 0.044 0.956 19 H 0.025 0.975 20 H 0.108 0.892 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.113 0.887 24 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.296 1.879 -3.764 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.233 4.233 3 Si 0.767 3.233 4 H -0.187 1.187 5 H -0.237 1.237 6 H -0.180 1.180 7 C -0.350 4.350 8 H 0.058 0.942 9 N -0.340 5.340 10 C -0.007 4.007 11 C -0.157 4.157 12 C -0.142 4.142 13 C -0.051 4.051 14 H 0.073 0.927 15 C 0.165 3.835 16 O -0.346 6.346 17 H 0.068 0.932 18 H 0.062 0.938 19 H 0.043 0.957 20 H 0.127 0.873 21 H 0.092 0.908 22 H 0.108 0.892 23 H 0.132 0.868 24 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.561 1.542 -3.798 15.127 hybrid contribution -0.630 0.702 0.276 0.982 sum 13.931 2.243 -3.522 14.543 Atomic orbital electron populations 1.70024 1.07658 1.26963 1.56081 1.25691 0.95728 1.01066 1.00827 0.86047 0.78379 0.79864 0.79025 1.18660 1.23750 1.17958 1.18376 0.87024 0.93564 1.36045 0.94184 1.44722 1.09221 1.29236 1.50839 1.21948 0.89094 0.91504 0.98124 1.22743 0.95696 0.99415 0.97866 1.22492 0.90481 1.01691 0.99519 1.22520 0.96581 0.95142 0.90889 0.92692 1.27386 0.82671 0.80244 0.93178 1.90405 1.24137 1.36701 1.83317 0.93238 0.93772 0.95672 0.87331 0.90773 0.89239 0.86826 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.55 13.97 21.65 0.30 -64.25 14 2 C -0.04 -2.44 5.10 84.86 0.43 -2.00 14 3 Si 0.94 46.62 24.00 68.60 1.65 48.27 14 4 H -0.26 -11.61 6.44 99.48 0.64 -10.97 14 5 H -0.31 -15.65 7.11 99.48 0.71 -14.94 14 6 H -0.25 -11.70 6.94 99.48 0.69 -11.01 14 7 C -0.22 -13.55 9.42 84.03 0.79 -12.76 14 8 H 0.04 2.74 8.06 -2.91 -0.02 2.72 14 9 N -0.61 -30.28 2.67 -672.39 -1.80 -32.08 14 10 C 0.12 4.54 7.23 86.86 0.63 5.17 14 11 C -0.12 -3.15 7.09 31.99 0.23 -2.92 14 12 C -0.10 -2.69 6.47 31.78 0.21 -2.49 14 13 C 0.06 2.21 2.46 44.59 0.11 2.32 14 14 H 0.06 2.29 3.29 -2.39 -0.01 2.28 14 15 C 0.31 12.65 9.61 71.23 0.68 13.34 14 16 O -0.48 -25.21 16.23 -1.47 -0.02 -25.23 14 17 H 0.26 16.46 8.31 -92.71 -0.77 15.69 14 18 H 0.04 1.73 8.14 -2.39 -0.02 1.71 14 19 H 0.03 0.98 8.14 -2.39 -0.02 0.96 14 20 H 0.11 2.07 8.14 -2.39 -0.02 2.05 14 21 H 0.07 1.91 8.14 -2.39 -0.02 1.89 14 22 H 0.09 2.00 7.84 -2.39 -0.02 1.98 14 23 H 0.11 2.10 8.14 -2.39 -0.02 2.09 14 24 H 0.13 3.58 8.06 -2.91 -0.02 3.56 14 Total: -1.00 -78.94 201.01 4.30 -74.64 By element: Atomic # 1 Polarization: -3.10 SS G_CDS: 1.10 Total: -2.00 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 3.08 Total: 0.65 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -1.49 Total: -96.32 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.02 Total: -25.23 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.65 Total: 48.27 kcal Total: -78.94 4.30 -74.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885226067.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.150 kcal (2) G-P(sol) polarization free energy of solvation -78.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds