Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 115.56380 * 2 1 4 4 C 1.53077 * 117.49482 * 214.28074 * 2 1 3 5 5 C 1.52999 * 59.98428 * 252.51936 * 4 2 1 6 6 H 1.09002 * 117.49768 * 107.50388 * 5 4 2 7 7 C 1.52996 * 117.49914 * 252.49662 * 5 4 2 8 8 C 1.53002 * 109.47346 * 243.74844 * 7 5 4 9 9 C 1.50706 * 109.46931 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 299.99813 * 13 11 9 16 16 H 1.48498 * 109.47295 * 60.00420 * 13 11 9 17 17 H 1.09002 * 109.47602 * 274.31468 * 1 2 3 18 18 H 1.09001 * 109.47113 * 34.31765 * 1 2 3 19 19 H 1.09002 * 109.46951 * 154.31487 * 1 2 3 20 20 H 1.08999 * 109.47254 * 205.68660 * 3 2 1 21 21 H 1.09004 * 109.46640 * 325.68601 * 3 2 1 22 22 H 1.08998 * 109.47045 * 85.68007 * 3 2 1 23 23 H 1.09002 * 117.50635 * 145.03844 * 4 2 1 24 24 H 1.09000 * 117.49434 * 0.02562 * 4 2 1 25 25 H 1.09004 * 109.47368 * 123.75032 * 7 5 4 26 26 H 1.09004 * 109.47108 * 3.75133 * 7 5 4 27 27 H 1.09000 * 109.46986 * 60.00254 * 8 7 5 28 28 H 1.08992 * 109.46974 * 300.00318 * 8 7 5 29 29 H 0.97000 * 119.99706 * 359.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2367 -1.1220 -0.7648 5 6 2.2364 -1.1209 0.7652 6 1 1.6111 -1.8582 1.2688 7 6 3.5488 -0.7759 1.4717 8 6 4.0298 -1.9866 2.2741 9 6 5.3229 -1.6468 2.9694 10 1 5.7580 -0.6654 2.8513 11 6 5.9506 -2.5890 3.7565 12 7 5.4210 -3.7842 3.9000 13 14 7.5530 -2.1676 4.6190 14 1 8.0205 -3.3432 5.3967 15 1 8.5785 -1.8038 3.6083 16 1 7.3344 -1.0212 5.5372 17 1 -0.3634 0.0773 1.0247 18 1 -0.3633 0.8488 -0.5794 19 1 -0.3633 -0.9261 -0.4454 20 1 3.1824 1.3084 -0.4454 21 1 1.5812 2.0742 -0.5794 22 1 2.2771 1.7413 1.0247 23 1 3.1720 -0.8767 -1.2681 24 1 1.6113 -1.8594 -1.2680 25 1 3.3885 0.0660 2.1453 26 1 4.3017 -0.5093 0.7298 27 1 4.1902 -2.8284 1.6005 28 1 3.2770 -2.2531 3.0158 29 1 4.5887 -4.0029 3.4524 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885226099.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = -30.194454 kcal Electronic energy + Delta-G solvation = -9477.466779 eV Core-core repulsion = 7785.309203 eV Total energy + Delta-G solvation = -1692.157577 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.70139 -35.93797 -32.80544 -29.79340 -28.46373 -26.68358 -23.80156 -21.69414 -19.66514 -18.77610 -16.23097 -15.65518 -15.52915 -15.23027 -14.67053 -14.57132 -13.68107 -13.34774 -13.18484 -12.84681 -12.70036 -12.27659 -12.12572 -12.06785 -11.88879 -11.80800 -10.85161 -10.66205 -10.52384 -10.22888 -8.71515 -6.41893 1.51141 1.60453 1.79980 2.56070 2.79232 3.13905 3.72135 3.86505 3.93488 4.20342 4.42009 4.63595 4.66658 4.77858 4.82740 4.87329 4.99343 5.03237 5.06109 5.15135 5.22049 5.28504 5.41122 5.48845 5.53903 5.98841 6.16349 6.55202 7.41275 8.69130 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.089804 B = 0.009520 C = 0.009040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.714627 B = 2940.359346 C = 3096.466697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 C -0.113 4.113 4 C -0.169 4.169 5 C -0.165 4.165 6 H 0.085 0.915 7 C -0.056 4.056 8 C 0.011 3.989 9 C -0.623 4.623 10 H 0.051 0.949 11 C -0.041 4.041 12 N -0.938 5.938 13 Si 1.120 2.880 14 H -0.282 1.282 15 H -0.268 1.268 16 H -0.267 1.267 17 H 0.056 0.944 18 H 0.078 0.922 19 H 0.059 0.941 20 H 0.050 0.950 21 H 0.080 0.920 22 H 0.052 0.948 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.049 0.951 26 H 0.048 0.952 27 H -0.015 1.015 28 H -0.015 1.015 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 8.543 -7.583 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.121 4.121 3 C -0.170 4.170 4 C -0.206 4.206 5 C -0.183 4.183 6 H 0.104 0.896 7 C -0.094 4.094 8 C -0.026 4.026 9 C -0.660 4.660 10 H 0.069 0.931 11 C -0.238 4.238 12 N -0.575 5.575 13 Si 0.940 3.060 14 H -0.207 1.207 15 H -0.193 1.193 16 H -0.192 1.192 17 H 0.075 0.925 18 H 0.097 0.903 19 H 0.078 0.922 20 H 0.069 0.931 21 H 0.099 0.901 22 H 0.071 0.929 23 H 0.108 0.892 24 H 0.120 0.880 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.548 7.949 -6.602 11.728 hybrid contribution -1.229 0.089 -0.888 1.519 sum -6.776 8.038 -7.491 12.909 Atomic orbital electron populations 1.21363 0.90610 1.02757 1.02075 1.21791 0.95679 0.91372 1.03267 1.21337 1.00014 0.93856 1.01822 1.23348 1.02418 1.01654 0.93194 1.22502 0.98847 1.02421 0.94555 0.89629 1.20832 0.93906 0.97301 0.97323 1.19161 0.95021 0.94559 0.93851 1.22549 1.09497 1.01318 1.32664 0.93115 1.27556 1.06787 0.92805 0.96650 1.70918 1.20688 1.22082 1.43853 0.82915 0.71095 0.76008 0.75939 1.20731 1.19274 1.19237 0.92504 0.90285 0.92170 0.93067 0.90119 0.92852 0.89246 0.87973 0.93229 0.93358 0.99663 0.99687 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.85 71.98 0.71 -1.78 15 2 C -0.12 -3.40 2.70 -52.16 -0.14 -3.54 15 3 C -0.11 -2.90 8.86 71.98 0.64 -2.26 15 4 C -0.17 -5.10 9.47 30.62 0.29 -4.81 15 5 C -0.17 -6.01 5.45 -10.79 -0.06 -6.07 15 6 H 0.09 3.27 8.08 -2.39 -0.02 3.25 15 7 C -0.06 -2.49 4.51 30.59 0.14 -2.35 15 8 C 0.01 0.62 4.24 29.85 0.13 0.74 15 9 C -0.62 -37.40 9.11 25.60 0.23 -37.17 15 10 H 0.05 2.94 7.74 -2.91 -0.02 2.92 15 11 C -0.04 -2.48 5.46 84.66 0.46 -2.02 15 12 N -0.94 -60.46 13.65 21.45 0.29 -60.17 15 13 Si 1.12 51.57 29.90 68.60 2.05 53.63 15 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 15 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 17 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 18 H 0.08 1.42 7.92 -2.39 -0.02 1.40 15 19 H 0.06 1.27 7.90 -2.39 -0.02 1.25 15 20 H 0.05 1.36 7.90 -2.39 -0.02 1.34 15 21 H 0.08 1.61 7.92 -2.39 -0.02 1.60 15 22 H 0.05 1.43 7.84 -2.39 -0.02 1.42 15 23 H 0.09 2.69 7.94 -2.39 -0.02 2.68 15 24 H 0.10 2.71 8.05 -2.39 -0.02 2.69 15 25 H 0.05 2.17 7.77 -2.39 -0.02 2.15 15 26 H 0.05 2.11 7.88 -2.38 -0.02 2.09 15 27 H -0.01 -0.88 8.01 -2.39 -0.02 -0.90 15 28 H -0.02 -0.89 8.01 -2.39 -0.02 -0.91 15 29 H 0.25 16.63 7.22 -92.71 -0.67 15.96 15 Total: -1.00 -67.01 242.86 5.92 -61.09 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.18 Total: 4.71 kcal Atomic # 6 Polarization: -61.65 SS G_CDS: 2.40 Total: -59.25 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.29 Total: -60.17 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.63 kcal Total: -67.01 5.92 -61.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885226099.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.893 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds