Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 115.56279 * 2 1 4 4 C 1.53078 * 117.51653 * 214.29945 * 2 1 3 5 5 C 1.52998 * 117.50060 * 145.68898 * 2 1 3 6 6 H 1.09003 * 117.50146 * 215.00508 * 5 2 1 7 7 C 1.52996 * 117.49875 * 0.02562 * 5 2 1 8 8 C 1.53002 * 109.47346 * 184.91084 * 7 5 2 9 9 C 1.50706 * 109.46931 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47326 * 270.00340 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00090 * 13 11 9 16 16 H 1.48498 * 109.47210 * 149.99801 * 13 11 9 17 17 H 1.08997 * 109.46990 * 274.30768 * 1 2 3 18 18 H 1.09000 * 109.46657 * 34.31513 * 1 2 3 19 19 H 1.09006 * 109.46668 * 154.30970 * 1 2 3 20 20 H 1.08999 * 109.47259 * 205.68773 * 3 2 1 21 21 H 1.08997 * 109.46940 * 325.69198 * 3 2 1 22 22 H 1.09003 * 109.46759 * 85.68771 * 3 2 1 23 23 H 1.08999 * 117.49417 * 145.03910 * 4 2 1 24 24 H 1.08997 * 117.52717 * 359.97438 * 4 2 1 25 25 H 1.09004 * 109.47368 * 64.91272 * 7 5 2 26 26 H 1.09004 * 109.47108 * 304.91373 * 7 5 2 27 27 H 1.09000 * 109.46986 * 60.00254 * 8 7 5 28 28 H 1.08993 * 109.47662 * 300.00031 * 8 7 5 29 29 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2372 -1.1215 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 3.1714 -0.8750 1.2686 7 6 1.3589 -2.1565 1.4709 8 6 2.2436 -3.1129 2.2732 9 6 1.3790 -4.1325 2.9690 10 1 0.3060 -4.1017 2.8505 11 6 1.9581 -5.1046 3.7569 12 7 1.2036 -5.9946 4.3638 13 14 3.8139 -5.1574 3.9625 14 1 4.4051 -6.0145 2.9037 15 1 4.3636 -3.7824 3.8506 16 1 4.1484 -5.7171 5.2967 17 1 -0.3633 0.0772 1.0247 18 1 -0.3632 0.8488 -0.5794 19 1 -0.3633 -0.9262 -0.4455 20 1 3.1824 1.3085 -0.4454 21 1 1.5812 2.0743 -0.5792 22 1 2.2773 1.7414 1.0248 23 1 3.1725 -0.8756 -1.2679 24 1 1.6127 -1.8598 -1.2681 25 1 0.7939 -2.7205 0.7288 26 1 0.6683 -1.6489 2.1445 27 1 2.8085 -2.5489 3.0154 28 1 2.9341 -3.6204 1.5998 29 1 1.6110 -6.6788 4.9178 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885226100.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = -5.151561 kcal Electronic energy + Delta-G solvation = -9486.776640 eV Core-core repulsion = 7795.705005 eV Total energy + Delta-G solvation = -1691.071635 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.37050 -33.43664 -31.27173 -28.67200 -27.40950 -25.30516 -21.36290 -19.94139 -18.36086 -16.55364 -14.79677 -14.31056 -13.87973 -13.62087 -13.24910 -12.61248 -12.27181 -12.13583 -11.81646 -11.48959 -11.08708 -11.01113 -10.62193 -10.26481 -10.02696 -9.70668 -9.23445 -9.11267 -8.85939 -8.48709 -5.99943 -3.97237 3.34250 3.41092 3.45926 4.07996 4.49701 4.99250 5.07151 5.26416 5.32813 5.34701 5.78492 5.82080 5.95580 6.03528 6.10872 6.15630 6.21172 6.32108 6.42041 6.55313 6.58501 6.87457 7.02364 7.39498 7.52829 7.85575 8.59553 9.05437 9.63280 11.13762 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.076256 B = 0.010603 C = 0.009820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.094711 B = 2640.081064 C = 2850.583609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.141 4.141 3 C -0.111 4.111 4 C -0.177 4.177 5 C -0.134 4.134 6 H 0.097 0.903 7 C -0.072 4.072 8 C -0.012 4.012 9 C -0.519 4.519 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.906 5.906 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.266 1.266 16 H -0.288 1.288 17 H 0.060 0.940 18 H 0.051 0.949 19 H 0.057 0.943 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.014 0.986 28 H 0.011 0.989 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 11.243 -8.034 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C -0.168 4.168 4 C -0.214 4.214 5 C -0.152 4.152 6 H 0.115 0.885 7 C -0.109 4.109 8 C -0.050 4.050 9 C -0.557 4.557 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.546 5.546 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.190 1.190 16 H -0.215 1.215 17 H 0.079 0.921 18 H 0.070 0.930 19 H 0.076 0.924 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.338 11.091 -7.913 13.824 hybrid contribution 1.021 -0.231 0.166 1.060 sum 3.359 10.860 -7.747 13.756 Atomic orbital electron populations 1.21278 0.92379 1.01326 1.01790 1.21598 0.94816 0.91085 1.06648 1.21315 0.99548 0.94490 1.01476 1.23268 1.01650 1.01137 0.95299 1.22747 1.00813 0.98656 0.93008 0.88530 1.21064 0.97171 0.94612 0.98072 1.19567 0.95781 0.94725 0.94885 1.21196 0.95130 1.11356 1.28032 0.91125 1.25040 0.98026 0.95280 0.95246 1.69926 1.35348 1.17036 1.32242 0.86759 0.86385 0.78704 0.77329 1.20336 1.19029 1.21457 0.92138 0.93005 0.92404 0.92899 0.92683 0.92478 0.89716 0.89076 0.92786 0.92454 0.96738 0.97081 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 8.86 37.16 0.33 -1.17 15 2 C -0.14 -2.04 2.70 -154.47 -0.42 -2.46 15 3 C -0.11 -1.35 9.85 37.16 0.37 -0.98 15 4 C -0.18 -2.64 9.47 -26.69 -0.25 -2.90 15 5 C -0.13 -2.31 5.45 -90.62 -0.49 -2.80 15 6 H 0.10 1.67 8.08 -51.93 -0.42 1.25 15 7 C -0.07 -1.48 4.51 -26.73 -0.12 -1.61 15 8 C -0.01 -0.30 4.00 -27.88 -0.11 -0.42 15 9 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 15 10 H 0.07 2.22 7.99 -52.49 -0.42 1.80 15 11 C 0.06 1.94 5.47 -17.82 -0.10 1.84 15 12 N -0.91 -28.57 13.96 55.43 0.77 -27.79 15 13 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 15 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 15 H -0.27 -6.48 6.54 56.52 0.37 -6.11 15 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 17 H 0.06 0.84 7.83 -51.93 -0.41 0.44 15 18 H 0.05 0.60 7.92 -51.93 -0.41 0.19 15 19 H 0.06 0.80 7.90 -51.93 -0.41 0.39 15 20 H 0.05 0.60 7.90 -51.93 -0.41 0.19 15 21 H 0.05 0.58 7.92 -51.93 -0.41 0.17 15 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.08 1.14 8.05 -51.93 -0.42 0.72 15 24 H 0.09 1.36 7.94 -51.93 -0.41 0.95 15 25 H 0.05 1.12 7.87 -51.93 -0.41 0.71 15 26 H 0.06 1.19 7.77 -51.93 -0.40 0.79 15 27 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 15 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 15 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 15 LS Contribution 240.56 15.07 3.63 3.63 Total: -1.00 -30.64 240.56 -6.29 -36.93 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -4.89 Total: -4.31 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -1.13 Total: -26.09 kcal Atomic # 7 Polarization: -28.57 SS G_CDS: 0.77 Total: -27.79 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.64 -6.29 -36.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885226100.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.782 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds