Wall clock time and date at job start Mon Mar 30 2020 02:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47393 * 2 1 4 4 C 1.52996 * 109.47341 * 240.00105 * 2 1 3 5 5 C 1.53000 * 109.47391 * 65.00040 * 4 2 1 6 6 C 1.50700 * 109.47470 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00018 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00004 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00244 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99774 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47099 * 60.00793 * 10 8 6 12 12 H 1.48505 * 109.46807 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47287 * 300.00661 * 10 8 6 14 14 C 1.52996 * 109.47177 * 119.99918 * 2 1 3 15 15 C 1.53000 * 117.49997 * 300.00307 * 14 2 1 16 16 C 1.53002 * 60.02940 * 252.49592 * 15 14 2 17 17 H 1.08994 * 109.47220 * 179.97438 * 1 2 3 18 18 H 1.08995 * 109.47239 * 300.00014 * 1 2 3 19 19 H 1.09006 * 109.46923 * 60.00194 * 1 2 3 20 20 H 1.08998 * 109.47563 * 185.00383 * 4 2 1 21 21 H 1.09003 * 109.47451 * 305.00142 * 4 2 1 22 22 H 1.09005 * 109.47140 * 300.00256 * 5 4 2 23 23 H 1.09000 * 109.47411 * 59.99962 * 5 4 2 24 24 H 0.96991 * 120.00238 * 179.97438 * 9 8 6 25 25 H 1.09008 * 115.56055 * 85.68820 * 14 2 1 26 26 H 1.09002 * 117.49833 * 359.97438 * 15 14 2 27 27 H 1.09002 * 117.49953 * 144.99738 * 15 14 2 28 28 H 1.09000 * 117.49996 * 107.50493 * 16 15 14 29 29 H 1.08999 * 117.49664 * 252.51862 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6353 0.0690 -2.4953 6 6 2.1371 -0.6417 -3.7258 7 1 2.6891 -1.5649 -3.6288 8 6 1.8906 -0.1139 -4.9755 9 7 1.2180 1.0100 -5.0937 10 14 2.5133 -0.9946 -6.5007 11 1 1.9216 -2.3552 -6.5629 12 1 2.1204 -0.2276 -7.7101 13 1 3.9933 -1.1006 -6.4415 14 6 2.0399 -0.7212 1.2492 15 6 1.6356 -0.1495 2.6096 16 6 3.0743 0.0053 2.1125 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 3.1263 -0.7995 -1.2056 21 1 1.6054 -1.7198 -1.2952 22 1 0.5489 0.1472 -2.5390 23 1 2.0699 1.0675 -2.4494 24 1 1.0449 1.3815 -5.9727 25 1 2.1270 -1.8045 1.1643 26 1 1.0066 0.7407 2.6146 27 1 1.4564 -0.8566 3.4195 28 1 3.3916 0.9972 1.7905 29 1 3.8415 -0.6001 2.5951 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535663929.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:23 Heat of formation + Delta-G solvation = -25.336228 kcal Electronic energy + Delta-G solvation = -9468.369187 eV Core-core repulsion = 7776.422279 eV Total energy + Delta-G solvation = -1691.946908 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.16158 -35.97836 -34.14839 -30.61395 -27.16680 -24.99318 -23.06436 -21.95504 -20.59577 -18.48089 -16.55545 -16.40195 -15.66086 -15.24979 -14.44043 -14.04313 -13.88275 -13.17783 -12.97347 -12.70800 -12.47785 -12.32885 -12.05615 -11.74976 -11.56132 -11.39167 -11.17319 -10.76909 -10.59029 -10.51047 -8.19029 -6.30310 1.39142 1.42663 1.50594 2.41347 3.00293 3.13436 3.77833 4.06750 4.13936 4.25888 4.50397 4.53846 4.77005 4.84335 4.87525 5.04339 5.06791 5.11458 5.22795 5.33018 5.35989 5.42089 5.52095 5.58300 5.83469 5.88901 6.28161 6.87167 7.38652 8.92586 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.093941 B = 0.009406 C = 0.008990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.987015 B = 2975.967042 C = 3113.680941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.058 4.058 3 H 0.052 0.948 4 C -0.092 4.092 5 C 0.024 3.976 6 C -0.547 4.547 7 H 0.057 0.943 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.267 1.267 14 C -0.157 4.157 15 C -0.168 4.168 16 C -0.183 4.183 17 H 0.055 0.945 18 H 0.067 0.933 19 H 0.036 0.964 20 H 0.044 0.956 21 H 0.048 0.952 22 H -0.001 1.001 23 H -0.016 1.016 24 H 0.263 0.737 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 -3.056 11.567 12.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.076 4.076 3 H 0.070 0.930 4 C -0.129 4.129 5 C -0.013 4.013 6 C -0.585 4.585 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.192 1.192 14 C -0.175 4.175 15 C -0.205 4.205 16 C -0.220 4.220 17 H 0.074 0.926 18 H 0.086 0.914 19 H 0.055 0.945 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.017 0.983 23 H 0.003 0.997 24 H 0.072 0.928 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.105 0.895 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.985 -2.935 11.448 11.859 hybrid contribution 0.198 -0.076 -1.115 1.135 sum 1.183 -3.012 10.334 10.828 Atomic orbital electron populations 1.21757 0.94993 1.01693 1.00970 1.20684 0.95915 0.98021 0.92979 0.92957 1.21469 0.99208 0.98442 0.93792 1.19053 0.95203 0.94232 0.92783 1.21736 1.35233 1.08798 0.92708 0.92443 1.25991 0.95321 0.95767 1.02755 1.70093 1.41645 1.21099 1.24627 0.85507 0.79044 0.78665 0.77874 1.19108 1.20716 1.19203 1.22309 1.04780 0.99079 0.91312 1.22998 0.97506 1.03382 0.96624 1.23080 0.93011 1.01906 1.03977 0.92636 0.91370 0.94538 0.93680 0.93279 0.98280 0.99727 0.92781 0.87910 0.88789 0.87348 0.89493 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 8.79 71.98 0.63 -3.96 15 2 C -0.06 -2.03 2.54 -10.80 -0.03 -2.06 15 3 H 0.05 1.94 7.90 -2.39 -0.02 1.92 15 4 C -0.09 -3.96 4.60 30.59 0.14 -3.82 15 5 C 0.02 1.33 4.73 29.85 0.14 1.47 15 6 C -0.55 -32.31 9.11 25.60 0.23 -32.08 15 7 H 0.06 3.26 7.74 -2.91 -0.02 3.23 15 8 C 0.00 -0.05 5.46 84.65 0.46 0.41 15 9 N -0.93 -58.30 13.29 21.45 0.28 -58.02 15 10 Si 0.96 45.22 29.54 68.60 2.03 47.25 15 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 15 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 14 C -0.16 -4.41 5.15 -10.77 -0.06 -4.46 15 15 C -0.17 -3.77 9.73 30.60 0.30 -3.48 15 16 C -0.18 -4.43 10.18 30.62 0.31 -4.12 15 17 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 18 H 0.07 1.89 7.29 -2.39 -0.02 1.88 15 19 H 0.04 1.40 6.57 -2.38 -0.02 1.39 15 20 H 0.04 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.00 -0.06 6.57 -2.38 -0.02 -0.08 15 23 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 15 24 H 0.26 15.41 8.31 -92.71 -0.77 14.64 15 25 H 0.10 2.83 8.11 -2.38 -0.02 2.81 15 26 H 0.09 2.07 7.61 -2.39 -0.02 2.05 15 27 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 28 H 0.09 2.19 8.05 -2.39 -0.02 2.17 15 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 15 Total: -1.00 -64.18 241.43 5.53 -58.64 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.09 Total: 4.21 kcal Atomic # 6 Polarization: -54.22 SS G_CDS: 2.14 Total: -52.08 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.28 Total: -58.02 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -64.18 5.53 -58.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535663929.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.308 kcal (2) G-P(sol) polarization free energy of solvation -64.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds