Wall clock time and date at job start Mon Mar 30 2020 02:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00663 * 2 1 4 4 H 1.48494 * 109.47241 * 270.00138 * 3 2 1 5 5 H 1.48502 * 109.46874 * 30.00393 * 3 2 1 6 6 H 1.48502 * 109.47215 * 149.99537 * 3 2 1 7 7 C 1.37882 * 119.99293 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00282 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47294 * 59.99515 * 9 7 2 11 11 O 1.42902 * 109.46887 * 299.99903 * 9 7 2 12 12 C 1.50704 * 109.47213 * 180.02562 * 9 7 2 13 13 C 1.41375 * 126.80097 * 124.99960 * 12 9 7 14 14 C 1.35455 * 103.98439 * 179.97438 * 13 12 9 15 15 O 1.34035 * 106.44342 * 0.02562 * 14 13 12 16 16 N 1.20923 * 111.57389 * 359.97438 * 15 14 13 17 17 H 0.97009 * 119.99291 * 359.97438 * 1 2 3 18 18 H 0.96699 * 114.00464 * 299.99702 * 11 9 7 19 19 H 1.08003 * 128.01339 * 359.96125 * 13 12 9 20 20 H 1.07999 * 126.78027 * 179.73618 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5468 1.4399 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 1 0.6244 -2.5563 -0.8919 11 8 0.4288 -2.5756 1.1647 12 6 2.2300 -3.6447 -0.0015 13 6 2.2861 -4.7108 0.9254 14 6 3.3263 -5.4642 0.4953 15 8 3.8114 -4.8541 -0.5951 16 7 3.1917 -3.8487 -0.8548 17 1 -0.4849 0.8402 0.0004 18 1 0.9206 -2.5309 1.9962 19 1 1.6475 -4.8843 1.7790 20 1 3.6953 -6.3742 0.9450 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535830496.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:08 Heat of formation + Delta-G solvation = -16.815239 kcal Electronic energy + Delta-G solvation = -9469.992849 eV Core-core repulsion = 7441.323339 eV Total energy + Delta-G solvation = -2028.669510 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 169.053 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.73749 -38.05112 -34.46793 -34.29996 -32.48799 -29.28393 -25.61358 -23.70271 -21.89019 -19.36095 -18.69495 -18.25151 -16.78320 -16.58657 -15.67226 -15.14516 -14.55364 -13.93939 -13.49315 -13.01030 -12.86536 -12.22875 -12.03774 -11.64791 -11.11801 -10.71629 -10.49849 -10.30597 -8.23754 -6.50137 0.82721 1.36100 1.37559 1.47382 1.53011 2.34870 2.69642 3.00277 3.50872 3.95144 4.18695 4.48048 4.74153 4.93588 5.28059 5.39552 5.56304 5.89670 6.57190 7.19162 7.33597 7.66128 8.81094 Molecular weight = 169.05amu Principal moments of inertia in cm(-1) A = 0.074461 B = 0.015196 C = 0.013385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.944254 B = 1842.167865 C = 2091.432397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.030 3.970 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.578 4.578 8 H 0.048 0.952 9 C 0.299 3.701 10 H 0.036 0.964 11 O -0.561 6.561 12 C -0.018 4.018 13 C -0.243 4.243 14 C -0.050 4.050 15 O 0.089 5.911 16 N -0.401 5.401 17 H 0.267 0.733 18 H 0.363 0.637 19 H 0.188 0.812 20 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.631 -8.111 3.756 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.174 4.174 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.616 4.616 8 H 0.066 0.934 9 C 0.240 3.760 10 H 0.054 0.946 11 O -0.365 6.365 12 C -0.176 4.176 13 C -0.264 4.264 14 C -0.131 4.131 15 O 0.024 5.976 16 N -0.107 5.107 17 H 0.076 0.924 18 H 0.209 0.791 19 H 0.205 0.795 20 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 5.403 -7.392 2.224 9.422 hybrid contribution 0.136 0.705 0.919 1.167 sum 5.539 -6.687 3.143 9.235 Atomic orbital electron populations 1.70180 1.07458 1.27944 1.47549 1.25893 0.95658 1.02895 0.92917 0.85449 0.78608 0.78358 0.78520 1.19930 1.19787 1.19251 1.21700 0.92860 0.91821 1.55208 0.93387 1.17357 0.85528 0.87267 0.85820 0.94602 1.86520 1.37961 1.96174 1.15809 1.25195 0.97712 1.00387 0.94260 1.22981 1.03447 0.95568 1.04390 1.26903 0.95576 1.01576 0.89061 1.84759 1.46521 1.27458 1.38895 1.73778 1.09311 1.02953 1.24687 0.92402 0.79078 0.79452 0.71240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.77 12.84 21.45 0.28 -53.50 14 2 C 0.03 1.70 5.40 84.66 0.46 2.15 14 3 Si 0.97 44.60 29.54 68.60 2.03 46.63 14 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 14 5 H -0.27 -12.01 7.11 99.48 0.71 -11.30 14 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 14 7 C -0.58 -33.69 8.73 25.60 0.22 -33.46 14 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 14 9 C 0.30 16.36 3.38 29.10 0.10 16.45 14 10 H 0.04 2.22 8.14 -2.39 -0.02 2.20 14 11 O -0.56 -29.04 12.30 -148.98 -1.83 -30.87 14 12 C -0.02 -0.81 6.45 43.58 0.28 -0.53 14 13 C -0.24 -8.16 10.41 22.40 0.23 -7.93 14 14 C -0.05 -1.30 12.30 67.18 0.83 -0.47 14 15 O 0.09 3.16 11.20 71.68 0.80 3.96 14 16 N -0.40 -18.24 12.05 -49.57 -0.60 -18.83 14 17 H 0.27 14.99 8.31 -92.70 -0.77 14.22 14 18 H 0.36 16.17 8.88 -74.06 -0.66 15.51 14 19 H 0.19 5.27 8.05 -2.91 -0.02 5.24 14 20 H 0.27 3.14 8.06 -2.91 -0.02 3.12 14 Total: -1.00 -71.00 195.09 3.40 -67.60 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.60 Total: 8.78 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 2.12 Total: -23.78 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -0.32 Total: -72.33 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -1.03 Total: -26.91 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -71.00 3.40 -67.60 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535830496.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.789 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds