Wall clock time and date at job start Mon Mar 30 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.54830 * 119.62463 * 2 1 4 4 C 1.55233 * 81.33466 * 161.11044 * 3 2 1 5 5 C 1.50704 * 121.31015 * 196.17572 * 4 3 2 6 6 H 1.08001 * 119.99982 * 358.10330 * 5 4 3 7 7 C 1.37876 * 120.00052 * 178.10450 * 5 4 3 8 8 N 1.31520 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00058 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47232 * 89.99574 * 9 7 5 11 11 H 1.48499 * 109.47045 * 209.99903 * 9 7 5 12 12 H 1.48506 * 109.47100 * 329.99867 * 9 7 5 13 13 C 1.55602 * 118.86501 * 97.26776 * 2 1 3 14 14 C 1.56797 * 101.25016 * 62.19599 * 4 3 2 15 15 O 1.45498 * 99.22462 * 316.80615 * 14 4 3 16 16 H 1.09003 * 109.46963 * 60.00726 * 1 2 3 17 17 H 1.09001 * 109.47366 * 179.97438 * 1 2 3 18 18 H 1.08997 * 109.47401 * 300.00502 * 1 2 3 19 19 H 1.08998 * 114.55296 * 48.00147 * 3 2 1 20 20 H 1.08997 * 114.59185 * 274.22206 * 3 2 1 21 21 H 0.97005 * 119.99523 * 180.02562 * 8 7 5 22 22 H 1.08996 * 114.63269 * 85.33933 * 13 2 1 23 23 H 1.09000 * 114.63003 * 311.30668 * 13 2 1 24 24 H 1.08993 * 111.45207 * 74.31042 * 14 4 3 25 25 H 1.09003 * 111.44659 * 199.30878 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.2954 1.3459 0.0000 4 6 3.4419 0.4249 0.4968 5 6 4.6770 0.9931 1.1472 6 1 4.7910 2.0624 1.2477 7 6 5.6613 0.1480 1.6138 8 7 5.5223 -1.1541 1.4918 9 14 7.1918 0.8524 2.4206 10 1 6.9631 0.9890 3.8815 11 1 8.3405 -0.0581 2.1823 12 1 7.4885 2.1863 1.8392 13 6 2.2812 -0.1724 1.3517 14 6 3.6113 -0.5402 -0.7273 15 8 2.2088 -0.7911 -1.0222 16 1 -0.3633 0.5137 -0.8901 17 1 -0.3634 -1.0277 -0.0005 18 1 -0.3634 0.5139 0.8899 19 1 1.9426 2.0675 0.7368 20 1 2.4562 1.7763 -0.9884 21 1 6.2147 -1.7487 1.8205 22 1 2.4300 -1.2072 1.6600 23 1 1.9277 0.4757 2.1537 24 1 4.1110 -0.0446 -1.5595 25 1 4.1290 -1.4566 -0.4437 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772795161.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:55 Heat of formation + Delta-G solvation = -12.048933 kcal Electronic energy + Delta-G solvation = -9915.286164 eV Core-core repulsion = 8088.082342 eV Total energy + Delta-G solvation = -1827.203822 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.01506 -35.05027 -34.09066 -31.31848 -27.66676 -26.38303 -25.92905 -21.22967 -20.76040 -18.06891 -16.92296 -16.39740 -15.76760 -15.71176 -14.38606 -14.20127 -13.60677 -13.29698 -13.06699 -12.85820 -12.77046 -12.52487 -12.32130 -12.03304 -11.51454 -10.90941 -10.63583 -10.43969 -10.05213 -8.17330 -6.30046 1.42935 1.43939 1.54621 2.40500 2.98910 3.08247 3.55328 3.83766 4.03803 4.24472 4.54497 4.76274 4.88131 4.92036 4.97630 4.99789 5.11344 5.20286 5.35918 5.46711 5.55863 5.72943 5.80209 6.27948 6.75773 7.38514 8.90711 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.090563 B = 0.015567 C = 0.014890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.101272 B = 1798.302644 C = 1880.058657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.057 3.943 3 C -0.167 4.167 4 C 0.015 3.985 5 C -0.516 4.516 6 H 0.063 0.937 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.266 1.266 13 C -0.155 4.155 14 C 0.058 3.942 15 O -0.398 6.398 16 H 0.074 0.926 17 H 0.065 0.935 18 H 0.093 0.907 19 H 0.097 0.903 20 H 0.052 0.948 21 H 0.263 0.737 22 H 0.030 0.970 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 3.216 -0.350 6.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.018 3.982 3 C -0.205 4.205 4 C 0.015 3.985 5 C -0.553 4.553 6 H 0.081 0.919 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.788 3.212 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.190 1.190 13 C -0.193 4.193 14 C -0.018 4.018 15 O -0.318 6.318 16 H 0.093 0.907 17 H 0.085 0.915 18 H 0.112 0.888 19 H 0.116 0.884 20 H 0.070 0.930 21 H 0.072 0.928 22 H 0.049 0.951 23 H 0.115 0.885 24 H 0.074 0.926 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.540 2.906 -0.503 6.276 hybrid contribution 1.236 0.018 0.449 1.315 sum -4.304 2.924 -0.055 5.204 Atomic orbital electron populations 1.21218 0.87642 1.03114 1.03785 1.24205 0.94298 0.91260 0.88420 1.24472 0.99145 0.96426 1.00415 1.21636 0.91771 0.92923 0.92192 1.20733 1.02736 0.93056 1.38784 0.91907 1.25827 1.01202 0.95071 0.95857 1.70075 1.35158 1.03262 1.46414 0.85472 0.78472 0.78420 0.78787 1.19911 1.20889 1.19013 1.24402 0.99464 0.99427 0.96045 1.23795 0.81173 0.99971 0.96868 1.89438 1.19543 1.70642 1.52191 0.90717 0.91549 0.88814 0.88449 0.92972 0.92754 0.95092 0.88506 0.92608 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.00 10.22 71.98 0.74 -2.27 15 2 C 0.06 2.37 2.59 -14.76 -0.04 2.33 15 3 C -0.17 -7.08 7.27 27.87 0.20 -6.88 15 4 C 0.02 0.78 1.49 -55.26 -0.08 0.70 15 5 C -0.52 -28.26 9.37 25.60 0.24 -28.02 15 6 H 0.06 3.35 7.81 -2.91 -0.02 3.33 15 7 C 0.02 1.14 5.42 84.65 0.46 1.60 15 8 N -0.91 -52.27 11.85 21.45 0.25 -52.02 15 9 Si 0.96 42.67 29.54 68.60 2.03 44.70 15 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 13 C -0.16 -7.21 7.60 28.43 0.22 -6.99 15 14 C 0.06 3.02 7.32 73.31 0.54 3.55 15 15 O -0.40 -19.24 11.88 -148.98 -1.77 -21.01 15 16 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 17 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 18 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 19 H 0.10 3.69 7.83 -2.39 -0.02 3.67 15 20 H 0.05 2.17 8.11 -2.39 -0.02 2.15 15 21 H 0.26 14.34 8.31 -92.70 -0.77 13.57 15 22 H 0.03 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.10 4.06 7.83 -2.39 -0.02 4.04 15 24 H 0.06 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.07 3.72 6.96 -2.39 -0.02 3.71 15 Total: -1.00 -60.73 213.44 3.94 -56.79 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.16 Total: 7.52 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 2.27 Total: -35.98 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.25 Total: -52.02 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.77 Total: -21.01 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -60.73 3.94 -56.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772795161.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.744 kcal (2) G-P(sol) polarization free energy of solvation -60.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds