Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47391 * 2 1 4 4 H 1.09006 * 115.56234 * 330.69447 * 3 2 1 5 5 C 1.53005 * 117.49696 * 116.37388 * 3 2 1 6 6 C 1.52997 * 117.50072 * 184.99739 * 3 2 1 7 7 H 1.08995 * 117.51744 * 359.97438 * 6 3 2 8 8 C 1.53006 * 117.49584 * 145.02319 * 6 3 2 9 9 N 1.46500 * 109.46998 * 185.01480 * 8 6 3 10 10 C 1.36931 * 120.00396 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99774 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00545 * 180.02562 * 10 9 8 13 13 N 1.31624 * 120.00512 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99852 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47136 * 90.00264 * 14 12 10 16 16 H 1.48499 * 109.47548 * 210.00043 * 14 12 10 17 17 H 1.48496 * 109.47428 * 330.00419 * 14 12 10 18 18 H 1.08990 * 109.47144 * 300.00043 * 1 2 3 19 19 H 1.09006 * 109.47061 * 60.00033 * 1 2 3 20 20 H 1.09004 * 109.47410 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47090 * 240.00466 * 2 1 3 22 22 H 1.09001 * 109.47112 * 120.00457 * 2 1 3 23 23 H 1.08998 * 117.49953 * 0.02562 * 5 3 2 24 24 H 1.09000 * 117.51873 * 214.97257 * 5 3 2 25 25 H 1.08993 * 109.46955 * 305.01705 * 8 6 3 26 26 H 1.09000 * 109.47050 * 65.01534 * 8 6 3 27 27 H 0.97010 * 119.99909 * 359.97438 * 9 8 6 28 28 H 0.96997 * 120.00065 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3884 2.1718 -0.4813 5 6 2.8440 1.9075 1.2159 6 6 3.5502 1.6578 -0.1182 7 1 4.1806 0.7721 -0.1956 8 6 4.0300 2.8804 -0.9031 9 7 5.4910 2.8510 -1.0074 10 6 6.1503 3.8510 -1.6711 11 1 5.5932 4.6611 -2.1181 12 6 7.5346 3.8229 -1.7704 13 7 8.1683 4.7839 -2.4088 14 14 8.4981 2.4214 -0.9980 15 1 8.6532 1.3238 -1.9861 16 1 9.8387 2.9099 -0.5865 17 1 7.7685 1.9161 0.1925 18 1 -0.3633 0.5138 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 3.0098 1.1856 2.0156 24 1 2.7216 2.9426 1.5347 25 1 3.5941 2.8649 -1.9019 26 1 3.7209 3.7886 -0.3858 27 1 5.9915 2.1236 -0.6057 28 1 9.1356 4.7644 -2.4778 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019061694.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = 0.434644 kcal Electronic energy + Delta-G solvation = -9422.288263 eV Core-core repulsion = 7666.032953 eV Total energy + Delta-G solvation = -1756.255310 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.26274 -36.34302 -33.68869 -32.53960 -28.14127 -24.67064 -24.16644 -21.86935 -21.27710 -19.58274 -16.77581 -16.30594 -15.58757 -15.32984 -15.00427 -14.65211 -14.34937 -13.52496 -13.22501 -12.89661 -12.84963 -12.32095 -12.09774 -12.03127 -11.87436 -11.75441 -11.20450 -10.75036 -10.58470 -9.31784 -8.06007 -5.40284 1.36464 1.40544 1.48281 2.46604 2.84203 3.25556 3.49997 3.87930 4.00725 4.13929 4.32621 4.50923 4.53165 4.62846 4.87626 4.93160 4.99268 5.05973 5.18951 5.27918 5.29543 5.36908 5.54973 5.71558 6.18382 7.04293 7.80437 8.01200 9.15604 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.087184 B = 0.009430 C = 0.008996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.081554 B = 2968.672212 C = 3111.820277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.132 4.132 4 H 0.104 0.896 5 C -0.167 4.167 6 C -0.173 4.173 7 H 0.101 0.899 8 C 0.184 3.816 9 N -0.757 5.757 10 C -0.243 4.243 11 H 0.054 0.946 12 C -0.064 4.064 13 N -0.984 5.984 14 Si 0.961 3.039 15 H -0.275 1.275 16 H -0.292 1.292 17 H -0.252 1.252 18 H 0.058 0.942 19 H 0.053 0.947 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.367 0.633 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.055 -11.182 7.461 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.151 4.151 4 H 0.123 0.877 5 C -0.204 4.204 6 C -0.191 4.191 7 H 0.119 0.881 8 C 0.058 3.942 9 N -0.403 5.403 10 C -0.374 4.374 11 H 0.072 0.928 12 C -0.256 4.256 13 N -0.634 5.634 14 Si 0.787 3.213 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.177 1.177 18 H 0.077 0.923 19 H 0.072 0.928 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.125 0.875 24 H 0.109 0.891 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.200 0.800 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.064 -10.984 7.344 18.581 hybrid contribution 1.033 -0.161 0.047 1.047 sum -12.031 -11.145 7.392 17.989 Atomic orbital electron populations 1.21724 0.94339 1.02192 1.02043 1.21144 0.96845 0.92900 1.02153 1.22538 0.91790 0.99106 1.01615 0.87744 1.23262 1.03314 1.02558 0.91277 1.22486 0.96188 0.99221 1.01253 0.88050 1.20308 0.82457 0.94865 0.96542 1.42725 1.03217 1.27566 1.66829 1.19071 0.90527 1.01629 1.26194 0.92780 1.25571 0.97318 1.01198 1.01476 1.69893 1.08248 1.36155 1.49101 0.85323 0.77764 0.79005 0.79189 1.20112 1.21837 1.17705 0.92331 0.92754 0.91679 0.91885 0.91289 0.87541 0.89107 0.95926 0.96026 0.79963 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.87 71.98 0.71 -1.63 15 2 C -0.09 -1.83 6.21 30.59 0.19 -1.64 15 3 C -0.13 -3.22 5.46 -10.79 -0.06 -3.28 15 4 H 0.10 2.52 8.08 -2.38 -0.02 2.50 15 5 C -0.17 -4.29 9.82 30.60 0.30 -3.99 15 6 C -0.17 -5.42 5.57 -10.79 -0.06 -5.48 15 7 H 0.10 3.18 8.04 -2.39 -0.02 3.16 15 8 C 0.18 7.54 6.54 86.38 0.57 8.11 15 9 N -0.76 -37.75 5.41 -343.46 -1.86 -39.61 15 10 C -0.24 -14.62 10.47 84.03 0.88 -13.74 15 11 H 0.05 3.54 8.06 -2.91 -0.02 3.52 15 12 C -0.06 -3.91 5.50 84.86 0.47 -3.44 15 13 N -0.98 -64.61 13.97 21.65 0.30 -64.30 15 14 Si 0.96 46.60 27.74 68.60 1.90 48.50 15 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 16 H -0.29 -14.15 7.11 99.48 0.71 -13.44 15 17 H -0.25 -11.12 6.52 99.48 0.65 -10.47 15 18 H 0.06 0.89 8.14 -2.39 -0.02 0.88 15 19 H 0.05 0.88 8.14 -2.38 -0.02 0.86 15 20 H 0.06 0.88 8.14 -2.39 -0.02 0.86 15 21 H 0.06 1.28 8.14 -2.39 -0.02 1.26 15 22 H 0.07 1.25 7.88 -2.39 -0.02 1.24 15 23 H 0.11 2.35 8.03 -2.39 -0.02 2.33 15 24 H 0.09 2.38 8.03 -2.39 -0.02 2.36 15 25 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 26 H 0.02 0.91 7.88 -2.39 -0.02 0.89 15 27 H 0.37 17.27 5.46 -92.70 -0.51 16.76 15 28 H 0.26 16.11 8.31 -92.71 -0.77 15.34 15 Total: -1.00 -67.63 237.75 3.89 -63.73 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.55 Total: 16.77 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 2.99 Total: -25.09 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -1.55 Total: -103.91 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Total: -67.63 3.89 -63.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019061694.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.168 kcal (2) G-P(sol) polarization free energy of solvation -67.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds