Wall clock time and date at job start Mon Mar 30 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46831 * 2 1 4 4 H 1.09000 * 115.56170 * 29.30829 * 3 2 1 5 5 C 1.53005 * 117.49809 * 243.62153 * 3 2 1 6 6 C 1.53000 * 59.99970 * 252.51067 * 5 3 2 7 7 H 1.09004 * 117.49997 * 107.51330 * 6 5 3 8 8 C 1.53001 * 117.49951 * 252.50999 * 6 5 3 9 9 N 1.46490 * 109.47264 * 243.60605 * 8 6 5 10 10 C 1.36935 * 120.00121 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00139 * 0.02562 * 10 9 8 12 12 C 1.38816 * 120.00401 * 180.02562 * 10 9 8 13 13 N 1.31624 * 119.99569 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00172 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47055 * 180.02562 * 14 12 10 16 16 H 1.48505 * 109.46653 * 299.99639 * 14 12 10 17 17 H 1.48495 * 109.47483 * 60.00002 * 14 12 10 18 18 H 1.08994 * 109.47495 * 300.00258 * 1 2 3 19 19 H 1.09004 * 109.46924 * 60.00489 * 1 2 3 20 20 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47452 * 240.00229 * 2 1 3 22 22 H 1.08995 * 109.47139 * 119.99498 * 2 1 3 23 23 H 1.08994 * 117.50022 * 145.02268 * 5 3 2 24 24 H 1.09001 * 117.49712 * 359.97438 * 5 3 2 25 25 H 1.09003 * 109.46836 * 123.60313 * 8 6 5 26 26 H 1.08999 * 109.47071 * 3.61352 * 8 6 5 27 27 H 0.97000 * 120.00577 * 0.02562 * 9 8 6 28 28 H 0.97001 * 119.99885 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1718 0.4813 5 6 2.8439 1.9077 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1806 0.7723 0.1960 8 6 4.0299 2.8806 0.9032 9 7 5.4908 2.8513 1.0076 10 6 6.1500 3.8513 1.6713 11 1 5.5929 4.6613 2.1182 12 6 7.5344 3.8239 1.7698 13 7 8.2135 2.8368 1.2247 14 14 8.4336 5.1877 2.6759 15 1 9.8951 4.9272 2.6381 16 1 8.1461 6.4896 2.0219 17 1 7.9743 5.2307 4.0874 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5137 0.8900 23 1 2.7212 2.9428 -1.5344 24 1 3.0099 1.1858 -2.0156 25 1 3.5939 2.8651 1.9021 26 1 3.7207 3.7888 0.3859 27 1 5.9914 2.1239 0.6059 28 1 7.7465 2.1285 0.7545 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019061697.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:59 Heat of formation + Delta-G solvation = 16.606664 kcal Electronic energy + Delta-G solvation = -9405.087106 eV Core-core repulsion = 7649.533068 eV Total energy + Delta-G solvation = -1755.554039 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.99078 -34.55591 -32.20383 -30.35714 -25.64607 -23.68335 -22.70970 -20.40784 -20.07288 -17.16813 -15.32788 -14.60297 -14.40327 -13.65510 -13.39376 -13.11538 -12.95492 -12.07738 -11.99694 -11.23712 -10.99858 -10.71608 -10.70003 -10.51758 -9.98071 -9.69761 -9.54259 -9.06649 -8.77768 -6.93949 -6.06343 -3.04802 3.54251 3.58522 3.75879 4.05777 4.67539 4.82566 5.11223 5.15585 5.30016 5.42644 5.52696 5.67255 5.81228 5.89465 5.96170 6.08043 6.14077 6.17568 6.22001 6.37841 6.49246 6.75261 6.87146 7.85201 8.80745 9.29249 10.15536 10.31547 11.42713 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.119880 B = 0.008238 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 233.511223 B = 3398.206791 C = 3454.966425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.153 4.153 4 H 0.101 0.899 5 C -0.176 4.176 6 C -0.146 4.146 7 H 0.101 0.899 8 C 0.187 3.813 9 N -0.743 5.743 10 C -0.332 4.332 11 H 0.064 0.936 12 C -0.047 4.047 13 N -0.945 5.945 14 Si 1.082 2.918 15 H -0.285 1.285 16 H -0.295 1.295 17 H -0.295 1.295 18 H 0.053 0.947 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.022 0.978 26 H 0.020 0.980 27 H 0.367 0.633 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 -3.552 -2.663 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.131 4.131 3 C -0.172 4.172 4 H 0.119 0.881 5 C -0.213 4.213 6 C -0.165 4.165 7 H 0.119 0.881 8 C 0.060 3.940 9 N -0.388 5.388 10 C -0.463 4.463 11 H 0.082 0.918 12 C -0.244 4.244 13 N -0.591 5.591 14 Si 0.912 3.088 15 H -0.210 1.210 16 H -0.223 1.223 17 H -0.223 1.223 18 H 0.073 0.927 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.109 0.891 24 H 0.106 0.894 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.200 0.800 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.037 -2.801 -2.091 11.577 hybrid contribution -1.424 -0.728 -0.624 1.717 sum -12.461 -3.529 -2.715 13.232 Atomic orbital electron populations 1.21739 0.95802 1.01159 1.01775 1.21104 0.95579 0.94589 1.01787 1.22422 0.94219 0.97526 1.03011 0.88079 1.23151 1.04707 1.01870 0.91554 1.22683 0.93623 1.01039 0.99130 0.88111 1.20170 0.85655 0.92557 0.95639 1.42369 1.00557 1.28694 1.67224 1.20058 0.92416 1.02991 1.30789 0.91804 1.25806 0.93133 1.03446 1.02059 1.70873 1.37259 1.12406 1.38555 0.83223 0.76213 0.74119 0.75212 1.21002 1.22283 1.22264 0.92744 0.92787 0.93032 0.92124 0.91766 0.89067 0.89412 0.96011 0.96233 0.79972 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.87 37.16 0.37 -1.13 15 2 C -0.09 -1.13 6.22 -26.73 -0.17 -1.30 15 3 C -0.15 -2.20 5.46 -90.61 -0.49 -2.69 15 4 H 0.10 1.42 8.07 -51.93 -0.42 1.00 15 5 C -0.18 -2.67 9.82 -26.73 -0.26 -2.94 15 6 C -0.15 -2.61 5.57 -90.62 -0.50 -3.12 15 7 H 0.10 1.85 8.04 -51.93 -0.42 1.43 15 8 C 0.19 4.13 6.54 -4.05 -0.03 4.10 15 9 N -0.74 -20.08 5.60 -59.91 -0.34 -20.42 15 10 C -0.33 -9.87 9.99 -15.06 -0.15 -10.02 15 11 H 0.06 1.86 7.83 -52.49 -0.41 1.45 15 12 C -0.05 -1.43 5.50 -17.43 -0.10 -1.52 15 13 N -0.95 -30.23 13.70 55.49 0.76 -29.47 15 14 Si 1.08 26.66 29.92 -169.99 -5.09 21.58 15 15 H -0.28 -7.07 7.11 56.52 0.40 -6.67 15 16 H -0.30 -6.94 7.11 56.52 0.40 -6.54 15 17 H -0.30 -6.93 7.11 56.52 0.40 -6.53 15 18 H 0.05 0.54 8.14 -51.93 -0.42 0.12 15 19 H 0.05 0.53 8.14 -51.93 -0.42 0.10 15 20 H 0.05 0.46 8.14 -51.93 -0.42 0.03 15 21 H 0.06 0.71 7.87 -51.93 -0.41 0.30 15 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.09 1.39 8.03 -51.93 -0.42 0.97 15 24 H 0.09 1.22 8.03 -51.93 -0.42 0.80 15 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 26 H 0.02 0.44 7.88 -51.93 -0.41 0.03 15 27 H 0.37 10.06 6.43 -40.82 -0.26 9.80 15 28 H 0.25 8.04 6.77 -40.82 -0.28 7.76 15 LS Contribution 239.17 15.07 3.60 3.60 Total: -1.00 -32.09 239.17 -6.74 -38.83 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.35 Total: 4.50 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.33 Total: -18.62 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.42 Total: -49.89 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -5.09 Total: 21.58 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.09 -6.74 -38.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019061697.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.432 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds