Wall clock time and date at job start Mon Mar 30 2020 01:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46831 * 2 1 4 4 H 1.09000 * 115.56170 * 29.30829 * 3 2 1 5 5 C 1.53005 * 117.49809 * 243.62153 * 3 2 1 6 6 C 1.53000 * 59.99970 * 252.51067 * 5 3 2 7 7 H 1.09004 * 117.49997 * 107.51330 * 6 5 3 8 8 C 1.53001 * 117.49951 * 252.50999 * 6 5 3 9 9 N 1.46490 * 109.47264 * 243.60605 * 8 6 5 10 10 C 1.36935 * 120.00121 * 179.97438 * 9 8 6 11 11 H 1.07997 * 120.00139 * 0.02562 * 10 9 8 12 12 C 1.38816 * 120.00401 * 180.02562 * 10 9 8 13 13 N 1.31624 * 119.99569 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00172 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47055 * 180.02562 * 14 12 10 16 16 H 1.48505 * 109.46653 * 299.99639 * 14 12 10 17 17 H 1.48495 * 109.47483 * 60.00002 * 14 12 10 18 18 H 1.08994 * 109.47495 * 300.00258 * 1 2 3 19 19 H 1.09004 * 109.46924 * 60.00489 * 1 2 3 20 20 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47452 * 240.00229 * 2 1 3 22 22 H 1.08995 * 109.47139 * 119.99498 * 2 1 3 23 23 H 1.08994 * 117.50022 * 145.02268 * 5 3 2 24 24 H 1.09001 * 117.49712 * 359.97438 * 5 3 2 25 25 H 1.09003 * 109.46836 * 123.60313 * 8 6 5 26 26 H 1.08999 * 109.47071 * 3.61352 * 8 6 5 27 27 H 0.97000 * 120.00577 * 0.02562 * 9 8 6 28 28 H 0.97001 * 119.99885 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.3883 2.1718 0.4813 5 6 2.8439 1.9077 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1806 0.7723 0.1960 8 6 4.0299 2.8806 0.9032 9 7 5.4908 2.8513 1.0076 10 6 6.1500 3.8513 1.6713 11 1 5.5929 4.6613 2.1182 12 6 7.5344 3.8239 1.7698 13 7 8.2135 2.8368 1.2247 14 14 8.4336 5.1877 2.6759 15 1 9.8951 4.9272 2.6381 16 1 8.1461 6.4896 2.0219 17 1 7.9743 5.2307 4.0874 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5137 0.8900 23 1 2.7212 2.9428 -1.5344 24 1 3.0099 1.1858 -2.0156 25 1 3.5939 2.8651 1.9021 26 1 3.7207 3.7888 0.3859 27 1 5.9914 2.1239 0.6059 28 1 7.7465 2.1285 0.7545 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019061697.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:59 Heat of formation + Delta-G solvation = -3.478410 kcal Electronic energy + Delta-G solvation = -9405.958061 eV Core-core repulsion = 7649.533068 eV Total energy + Delta-G solvation = -1756.424993 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.32547 -36.57213 -33.58579 -32.15918 -27.54764 -24.94459 -24.57368 -21.79835 -21.33752 -19.35324 -17.05912 -16.14455 -15.61503 -15.53508 -15.05965 -14.60734 -14.56980 -13.27357 -12.97122 -12.79921 -12.61450 -12.32588 -12.14570 -11.90119 -11.87043 -11.40278 -11.18825 -10.78163 -10.60756 -9.15641 -8.45830 -5.39364 1.56890 1.67819 1.84614 2.67373 2.80285 3.35557 3.52476 3.84429 3.94276 4.11957 4.26194 4.45278 4.48260 4.56366 4.80944 4.86022 4.92002 4.98234 5.14319 5.22101 5.22356 5.30435 5.49353 5.53338 6.44252 7.04677 7.94875 8.06968 9.06469 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.119880 B = 0.008238 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 233.511223 B = 3398.206791 C = 3454.966425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.128 4.128 4 H 0.107 0.893 5 C -0.166 4.166 6 C -0.174 4.174 7 H 0.091 0.909 8 C 0.188 3.812 9 N -0.757 5.757 10 C -0.344 4.344 11 H 0.066 0.934 12 C -0.104 4.104 13 N -0.973 5.973 14 Si 1.132 2.868 15 H -0.290 1.290 16 H -0.276 1.276 17 H -0.276 1.276 18 H 0.055 0.945 19 H 0.059 0.941 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.104 0.896 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.361 0.639 28 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.668 -3.284 -2.695 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.146 4.146 4 H 0.125 0.875 5 C -0.203 4.203 6 C -0.193 4.193 7 H 0.109 0.891 8 C 0.061 3.939 9 N -0.402 5.402 10 C -0.475 4.475 11 H 0.084 0.916 12 C -0.295 4.295 13 N -0.620 5.620 14 Si 0.956 3.044 15 H -0.215 1.215 16 H -0.202 1.202 17 H -0.202 1.202 18 H 0.074 0.926 19 H 0.078 0.922 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.123 0.877 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.193 0.807 28 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.348 -2.538 -2.131 12.785 hybrid contribution -1.106 -0.833 -0.632 1.522 sum -13.454 -3.370 -2.763 14.142 Atomic orbital electron populations 1.21715 0.93948 1.02314 1.02154 1.21152 0.97144 0.92814 1.02014 1.22548 0.91542 0.99185 1.01348 0.87480 1.23239 1.03344 1.02487 0.91241 1.22444 0.96207 0.99095 1.01523 0.89078 1.20255 0.83013 0.94552 0.96032 1.42610 1.02610 1.28004 1.66990 1.20451 0.93048 1.03489 1.30478 0.91569 1.27394 0.94496 1.05036 1.02592 1.70991 1.37559 1.13289 1.40209 0.82592 0.74620 0.72078 0.75136 1.21548 1.20189 1.20171 0.92593 0.92206 0.91563 0.91455 0.92093 0.89057 0.87746 0.96499 0.96407 0.80715 0.94648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.87 71.98 0.71 -1.78 15 2 C -0.09 -2.06 6.22 30.60 0.19 -1.87 15 3 C -0.13 -3.42 5.46 -10.79 -0.06 -3.48 15 4 H 0.11 2.76 8.07 -2.39 -0.02 2.74 15 5 C -0.17 -4.77 9.82 30.60 0.30 -4.47 15 6 C -0.17 -6.14 5.57 -10.79 -0.06 -6.20 15 7 H 0.09 3.38 8.04 -2.39 -0.02 3.36 15 8 C 0.19 8.31 6.54 86.38 0.56 8.87 15 9 N -0.76 -41.59 5.60 -343.47 -1.92 -43.52 15 10 C -0.34 -20.55 9.99 84.03 0.84 -19.71 15 11 H 0.07 3.84 7.83 -2.91 -0.02 3.82 15 12 C -0.10 -6.30 5.50 84.86 0.47 -5.83 15 13 N -0.97 -63.03 13.70 21.65 0.30 -62.73 15 14 Si 1.13 53.22 29.92 68.60 2.05 55.27 15 15 H -0.29 -13.76 7.11 99.48 0.71 -13.06 15 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 18 H 0.05 0.95 8.14 -2.39 -0.02 0.93 15 19 H 0.06 0.97 8.14 -2.38 -0.02 0.96 15 20 H 0.07 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.07 1.40 7.87 -2.39 -0.02 1.38 15 22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.09 2.62 8.03 -2.39 -0.02 2.60 15 24 H 0.10 2.65 8.03 -2.39 -0.02 2.63 15 25 H 0.02 0.77 8.14 -2.39 -0.02 0.75 15 26 H 0.02 0.80 7.88 -2.39 -0.02 0.78 15 27 H 0.36 20.34 6.43 -92.71 -0.60 19.75 15 28 H 0.24 15.76 6.77 -92.71 -0.63 15.13 15 Total: -1.00 -67.97 239.17 4.04 -63.93 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.66 Total: 21.51 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 2.95 Total: -34.47 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -1.63 Total: -106.25 kcal Atomic # 14 Polarization: 53.22 SS G_CDS: 2.05 Total: 55.27 kcal Total: -67.97 4.04 -63.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019061697.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.451 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds