Wall clock time and date at job start Mon Mar 30 2020 01:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09003 * 115.54795 * 29.32827 * 3 2 1 5 5 C 1.53000 * 117.50165 * 243.62462 * 3 2 1 6 6 C 1.52994 * 59.99907 * 252.50793 * 5 3 2 7 7 H 1.09003 * 117.52034 * 252.51424 * 6 5 3 8 8 N 1.46900 * 117.50065 * 107.48769 * 6 5 3 9 9 C 1.46904 * 111.00077 * 136.37455 * 8 6 5 10 10 C 1.50702 * 109.46997 * 180.02562 * 9 8 6 11 11 H 1.08007 * 120.00061 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00140 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99788 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00266 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47128 * 90.00374 * 14 12 10 16 16 H 1.48498 * 109.47171 * 210.00295 * 14 12 10 17 17 H 1.48500 * 109.47108 * 330.00469 * 14 12 10 18 18 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 19 19 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 22 22 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 23 23 H 1.09001 * 117.49810 * 359.97438 * 5 3 2 24 24 H 1.08995 * 117.50134 * 145.01745 * 5 3 2 25 25 H 1.00907 * 110.99617 * 12.42614 * 8 6 5 26 26 H 1.08999 * 109.46964 * 300.00249 * 9 8 6 27 27 H 1.08994 * 109.46783 * 60.00478 * 9 8 6 28 28 H 0.96998 * 120.00008 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6580 0.1182 7 1 3.8920 2.5287 0.6778 8 7 4.3994 0.4640 0.2231 9 6 5.6652 0.7761 0.9002 10 6 6.5082 -0.4699 0.9884 11 1 6.1407 -1.4005 0.5818 12 6 7.7492 -0.4217 1.5873 13 7 8.1970 0.7117 2.0820 14 14 8.7939 -1.9663 1.6973 15 1 9.6548 -2.0686 0.4917 16 1 9.6473 -1.9013 2.9108 17 1 7.9101 -3.1570 1.7769 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 3.0098 1.1858 -2.0156 24 1 2.7212 2.9428 -1.5343 25 1 4.5659 0.0578 -0.6855 26 1 6.2015 1.5380 0.3345 27 1 5.4584 1.1471 1.9040 28 1 9.0702 0.7457 2.5030 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019062406.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:14 Heat of formation + Delta-G solvation = 5.946766 kcal Electronic energy + Delta-G solvation = -9473.497831 eV Core-core repulsion = 7717.481545 eV Total energy + Delta-G solvation = -1756.016287 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.83426 -33.83634 -32.14068 -30.73490 -26.12554 -23.50695 -21.84895 -21.15776 -19.24650 -16.38474 -15.28875 -14.50723 -14.37473 -13.89140 -13.41645 -12.42693 -12.32137 -11.84437 -11.72663 -11.33074 -11.03739 -10.81081 -10.68402 -10.55096 -10.04080 -9.91670 -9.44569 -9.03893 -8.46456 -7.13678 -6.03076 -4.05186 3.32288 3.38230 3.43028 4.31748 4.43225 5.03972 5.15440 5.32822 5.37661 5.51775 5.60119 5.79483 5.89972 6.08562 6.13899 6.27151 6.40750 6.43756 6.58209 6.84217 7.27183 7.43147 7.79475 8.13574 8.39331 8.61049 9.03993 9.59720 11.08131 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.076220 B = 0.009514 C = 0.008855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.269596 B = 2942.401938 C = 3161.292853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.151 4.151 4 H 0.094 0.906 5 C -0.214 4.214 6 C 0.039 3.961 7 H 0.100 0.900 8 N -0.655 5.655 9 C 0.194 3.806 10 C -0.515 4.515 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.900 3.100 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 H 0.049 0.951 19 H 0.047 0.953 20 H 0.048 0.952 21 H 0.074 0.926 22 H 0.057 0.943 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.330 0.670 26 H -0.012 1.012 27 H 0.029 0.971 28 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 0.485 -4.345 10.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.171 4.171 4 H 0.112 0.888 5 C -0.253 4.253 6 C -0.073 4.073 7 H 0.117 0.883 8 N -0.284 5.284 9 C 0.068 3.932 10 C -0.554 4.554 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.197 1.197 18 H 0.068 0.932 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.149 0.851 26 H 0.006 0.994 27 H 0.047 0.953 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.089 0.314 -3.654 10.735 hybrid contribution 1.096 -0.140 -0.599 1.257 sum -8.993 0.175 -4.254 9.950 Atomic orbital electron populations 1.21791 0.96849 1.00869 1.01086 1.20873 0.93850 0.94465 1.02674 1.22572 0.95108 0.97750 1.01681 0.88779 1.23521 1.07887 1.01295 0.92573 1.22554 0.92296 0.95005 0.97447 0.88259 1.60364 1.19479 1.24119 1.24390 1.19617 0.83670 0.96114 0.93835 1.21182 1.00663 0.95683 1.37848 0.91966 1.24986 0.97761 0.96356 0.95439 1.69965 1.19301 1.25323 1.39157 0.86470 0.80092 0.83254 0.77437 1.20726 1.21224 1.19744 0.93160 0.93345 0.93244 0.90787 0.92397 0.89233 0.89800 0.85138 0.99389 0.95264 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.87 37.16 0.37 -1.44 15 2 C -0.08 -1.22 5.67 -26.73 -0.15 -1.37 15 3 C -0.15 -2.37 5.74 -90.62 -0.52 -2.88 15 4 H 0.09 1.35 8.07 -51.93 -0.42 0.93 15 5 C -0.21 -3.29 9.88 -26.73 -0.26 -3.56 15 6 C 0.04 0.73 6.29 -67.72 -0.43 0.30 15 7 H 0.10 1.91 7.90 -51.93 -0.41 1.50 15 8 N -0.65 -14.43 6.14 -107.99 -0.66 -15.09 15 9 C 0.19 5.19 5.29 -4.97 -0.03 5.16 15 10 C -0.52 -14.79 9.32 -34.44 -0.32 -15.11 15 11 H 0.06 1.75 7.81 -52.48 -0.41 1.34 15 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 13 N -0.90 -27.10 13.29 55.43 0.74 -26.36 15 14 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 15 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 18 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 19 H 0.05 0.55 8.14 -51.93 -0.42 0.12 15 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 22 H 0.06 0.88 7.88 -51.93 -0.41 0.47 15 23 H 0.09 1.35 7.98 -51.93 -0.41 0.94 15 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.33 6.99 8.51 -39.29 -0.33 6.66 15 26 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 15 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 28 H 0.26 7.42 8.31 -40.82 -0.34 7.09 15 LS Contribution 241.24 15.07 3.64 3.64 Total: -1.00 -29.46 241.24 -7.24 -36.71 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.49 Total: 1.66 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -1.44 Total: -17.38 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.07 Total: -41.45 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.46 -7.24 -36.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019062406.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.653 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds