Wall clock time and date at job start Mon Mar 30 2020 01:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09003 * 115.54795 * 29.32827 * 3 2 1 5 5 C 1.53000 * 117.50165 * 243.62462 * 3 2 1 6 6 C 1.52994 * 59.99907 * 252.50793 * 5 3 2 7 7 H 1.09003 * 117.52034 * 252.51424 * 6 5 3 8 8 N 1.46900 * 117.50065 * 107.48769 * 6 5 3 9 9 C 1.46904 * 111.00077 * 136.37455 * 8 6 5 10 10 C 1.50702 * 109.46997 * 180.02562 * 9 8 6 11 11 H 1.08007 * 120.00061 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00140 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99788 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00266 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47128 * 90.00374 * 14 12 10 16 16 H 1.48498 * 109.47171 * 210.00295 * 14 12 10 17 17 H 1.48500 * 109.47108 * 330.00469 * 14 12 10 18 18 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 19 19 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 22 22 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 23 23 H 1.09001 * 117.49810 * 359.97438 * 5 3 2 24 24 H 1.08995 * 117.50134 * 145.01745 * 5 3 2 25 25 H 1.00907 * 110.99617 * 12.42614 * 8 6 5 26 26 H 1.08999 * 109.46964 * 300.00249 * 9 8 6 27 27 H 1.08994 * 109.46783 * 60.00478 * 9 8 6 28 28 H 0.96998 * 120.00008 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6580 0.1182 7 1 3.8920 2.5287 0.6778 8 7 4.3994 0.4640 0.2231 9 6 5.6652 0.7761 0.9002 10 6 6.5082 -0.4699 0.9884 11 1 6.1407 -1.4005 0.5818 12 6 7.7492 -0.4217 1.5873 13 7 8.1970 0.7117 2.0820 14 14 8.7939 -1.9663 1.6973 15 1 9.6548 -2.0686 0.4917 16 1 9.6473 -1.9013 2.9108 17 1 7.9101 -3.1570 1.7769 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 3.0098 1.1858 -2.0156 24 1 2.7212 2.9428 -1.5343 25 1 4.5659 0.0578 -0.6855 26 1 6.2015 1.5380 0.3345 27 1 5.4584 1.1471 1.9040 28 1 9.0702 0.7457 2.5030 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019062406.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:14 Heat of formation + Delta-G solvation = -13.130381 kcal Electronic energy + Delta-G solvation = -9474.325079 eV Core-core repulsion = 7717.481545 eV Total energy + Delta-G solvation = -1756.843534 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.26417 -35.77360 -33.90734 -32.20781 -28.22033 -24.62402 -23.94033 -22.57219 -20.63366 -18.52306 -16.96000 -16.25932 -16.01677 -15.16227 -15.02843 -14.29872 -13.95388 -13.44690 -13.02447 -12.89424 -12.69230 -12.63555 -12.17651 -11.99592 -11.74899 -11.53627 -11.25146 -10.67575 -10.60558 -8.88822 -8.24061 -6.35936 1.40839 1.42939 1.54858 2.39286 2.95122 3.09415 3.49820 3.87939 4.05919 4.30437 4.42973 4.58285 4.72930 4.84479 4.87783 5.01595 5.13333 5.23456 5.28960 5.29234 5.41058 5.60534 5.65582 6.00808 6.44236 6.70514 6.86849 7.35316 8.87805 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.076220 B = 0.009514 C = 0.008855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.269596 B = 2942.401938 C = 3161.292853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.134 4.134 4 H 0.113 0.887 5 C -0.188 4.188 6 C -0.005 4.005 7 H 0.086 0.914 8 N -0.652 5.652 9 C 0.210 3.790 10 C -0.538 4.538 11 H 0.065 0.935 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.976 3.024 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.264 1.264 18 H 0.055 0.945 19 H 0.061 0.939 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.334 0.666 26 H -0.038 1.038 27 H -0.002 1.002 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 -0.333 -5.181 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.153 4.153 4 H 0.131 0.869 5 C -0.226 4.226 6 C -0.116 4.116 7 H 0.104 0.896 8 N -0.281 5.281 9 C 0.083 3.917 10 C -0.576 4.576 11 H 0.083 0.917 12 C -0.197 4.197 13 N -0.575 5.575 14 Si 0.800 3.200 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.188 1.188 18 H 0.074 0.926 19 H 0.080 0.920 20 H 0.077 0.923 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.124 0.876 25 H 0.152 0.848 26 H -0.021 1.021 27 H 0.016 0.984 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.050 -0.497 -4.504 11.943 hybrid contribution 1.333 0.178 -0.351 1.390 sum -9.717 -0.319 -4.855 10.867 Atomic orbital electron populations 1.21729 0.94240 1.01913 1.02028 1.20874 0.96123 0.93603 1.01373 1.22698 0.92676 0.98733 1.01220 0.86907 1.23570 1.04899 1.02811 0.91351 1.22599 0.93978 0.93858 1.01215 0.89639 1.60257 1.17266 1.26068 1.24529 1.19228 0.85380 0.94814 0.92301 1.21538 1.01509 0.96255 1.38303 0.91713 1.25982 0.99112 0.99968 0.94646 1.70097 1.19930 1.27754 1.39710 0.85283 0.78111 0.78789 0.77809 1.19558 1.20640 1.18840 0.92566 0.92014 0.92255 0.93220 0.92656 0.88554 0.87587 0.84765 1.02063 0.98353 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.87 71.98 0.71 -2.34 15 2 C -0.08 -2.33 5.67 30.59 0.17 -2.15 15 3 C -0.13 -3.94 5.74 -10.80 -0.06 -4.00 15 4 H 0.11 2.92 8.07 -2.39 -0.02 2.90 15 5 C -0.19 -5.37 9.88 30.59 0.30 -5.07 15 6 C -0.01 -0.20 6.29 44.91 0.28 0.09 15 7 H 0.09 3.39 7.90 -2.39 -0.02 3.38 15 8 N -0.65 -29.31 6.14 -495.59 -3.04 -32.36 15 9 C 0.21 11.71 5.29 85.56 0.45 12.16 15 10 C -0.54 -31.41 9.32 25.60 0.24 -31.17 15 11 H 0.06 3.66 7.81 -2.91 -0.02 3.64 15 12 C 0.00 0.06 5.46 84.65 0.46 0.53 15 13 N -0.93 -57.40 13.29 21.45 0.28 -57.12 15 14 Si 0.98 44.76 29.54 68.60 2.03 46.78 15 15 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 17 H -0.26 -11.66 7.11 99.48 0.71 -10.95 15 18 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 19 H 0.06 1.18 8.14 -2.39 -0.02 1.16 15 20 H 0.06 1.16 8.14 -2.39 -0.02 1.14 15 21 H 0.05 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.05 1.58 7.88 -2.39 -0.02 1.56 15 23 H 0.10 2.66 7.98 -2.39 -0.02 2.64 15 24 H 0.11 2.60 8.14 -2.39 -0.02 2.58 15 25 H 0.33 14.25 8.51 -89.69 -0.76 13.49 15 26 H -0.04 -2.28 8.14 -2.39 -0.02 -2.30 15 27 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 Total: -1.00 -63.50 241.24 2.18 -61.32 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.35 Total: 13.33 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 2.56 Total: -31.96 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -2.76 Total: -89.47 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.50 2.18 -61.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019062406.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.190 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds