Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46953 * 2 1 4 4 H 1.08995 * 115.55347 * 330.67522 * 3 2 1 5 5 C 1.53007 * 117.51712 * 116.36916 * 3 2 1 6 6 C 1.53001 * 117.50024 * 184.99684 * 3 2 1 7 7 H 1.09000 * 117.49166 * 0.02562 * 6 3 2 8 8 N 1.46898 * 117.49693 * 144.99997 * 6 3 2 9 9 C 1.46903 * 110.99849 * 205.00362 * 8 6 3 10 10 C 1.50694 * 109.47066 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 H 1.08994 * 109.46994 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.46847 * 299.99604 * 1 2 3 20 20 H 1.09001 * 109.46818 * 59.99841 * 1 2 3 21 21 H 1.08996 * 109.46847 * 240.00395 * 2 1 3 22 22 H 1.09001 * 109.46818 * 120.00159 * 2 1 3 23 23 H 1.09000 * 117.49238 * 359.97438 * 5 3 2 24 24 H 1.08995 * 117.50204 * 214.97279 * 5 3 2 25 25 H 1.00895 * 110.99776 * 328.95666 * 8 6 3 26 26 H 1.09007 * 109.47052 * 59.99769 * 9 8 6 27 27 H 1.09003 * 109.46808 * 300.00462 * 9 8 6 28 28 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 -0.4816 5 6 2.8439 1.9081 1.2158 6 6 3.5502 1.6580 -0.1182 7 1 4.1803 0.7720 -0.1964 8 7 4.0109 2.8315 -0.8722 9 6 5.3630 2.6173 -1.4050 10 6 5.8009 3.8395 -2.1700 11 1 5.1408 4.6902 -2.2526 12 6 7.0442 3.8714 -2.7655 13 7 7.8480 2.8352 -2.6654 14 14 7.5867 5.3862 -3.7144 15 1 8.9536 5.1697 -4.2529 16 1 6.6452 5.6310 -4.8363 17 1 7.5929 6.5623 -2.8078 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 3.0092 1.1867 2.0160 24 1 2.7211 2.9433 1.5339 25 1 3.3638 3.0636 -1.6107 26 1 5.3588 1.7538 -2.0704 27 1 6.0539 2.4377 -0.5812 28 1 8.7224 2.8575 -3.0847 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019062409.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = 5.155599 kcal Electronic energy + Delta-G solvation = -9366.412140 eV Core-core repulsion = 7610.361546 eV Total energy + Delta-G solvation = -1756.050594 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.78907 -33.99596 -32.29163 -30.70174 -26.15531 -23.62432 -21.94845 -20.38454 -20.09719 -16.39730 -15.11907 -14.74554 -14.26838 -14.25278 -13.21667 -12.68366 -12.16772 -12.06505 -11.80955 -11.37997 -11.02872 -10.83538 -10.72593 -10.68619 -10.05695 -9.94288 -9.39856 -9.09631 -8.45987 -7.19304 -6.02522 -4.04753 3.34489 3.38016 3.41370 4.26901 4.42887 4.83177 5.18187 5.26777 5.33280 5.40454 5.52232 5.66719 5.93532 5.99030 6.03936 6.20580 6.23576 6.26532 6.51543 6.65423 7.28613 7.42711 7.79894 8.14373 8.40135 8.61862 9.04119 9.59969 11.08628 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.101926 B = 0.008274 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 274.644463 B = 3383.425142 C = 3413.268262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.174 4.174 4 H 0.101 0.899 5 C -0.173 4.173 6 C 0.034 3.966 7 H 0.090 0.910 8 N -0.661 5.661 9 C 0.195 3.805 10 C -0.516 4.516 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.901 3.099 15 H -0.287 1.287 16 H -0.277 1.277 17 H -0.276 1.276 18 H 0.049 0.951 19 H 0.053 0.947 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.331 0.669 26 H -0.012 1.012 27 H 0.029 0.971 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.283 -3.933 3.935 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.194 4.194 4 H 0.119 0.881 5 C -0.211 4.211 6 C -0.078 4.078 7 H 0.108 0.892 8 N -0.290 5.290 9 C 0.069 3.931 10 C -0.555 4.555 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.729 3.271 15 H -0.213 1.213 16 H -0.202 1.202 17 H -0.201 1.201 18 H 0.068 0.932 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.149 0.851 26 H 0.006 0.994 27 H 0.047 0.953 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.848 -3.651 4.419 11.395 hybrid contribution 0.263 0.166 -1.185 1.225 sum -9.586 -3.485 3.234 10.700 Atomic orbital electron populations 1.21734 0.95918 1.01016 1.01736 1.21101 0.95506 0.94803 1.01608 1.22729 0.95086 0.97225 1.04318 0.88132 1.23245 1.04511 1.01763 0.91620 1.22535 0.91893 0.94771 0.98558 0.89218 1.60433 1.06039 1.32533 1.30037 1.19606 0.83664 0.95932 0.93932 1.21150 1.00963 1.01281 1.32115 0.92009 1.24993 0.96508 0.96496 0.96551 1.69957 1.09212 1.29760 1.44805 0.86519 0.77536 0.83032 0.80060 1.21313 1.20246 1.20137 0.93155 0.92795 0.92830 0.92012 0.92168 0.89720 0.88874 0.85095 0.99410 0.95271 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.87 37.16 0.37 -1.21 15 2 C -0.09 -1.18 6.22 -26.73 -0.17 -1.35 15 3 C -0.17 -2.64 5.54 -90.62 -0.50 -3.15 15 4 H 0.10 1.52 8.07 -51.93 -0.42 1.10 15 5 C -0.17 -2.78 10.11 -26.73 -0.27 -3.05 15 6 C 0.03 0.64 5.98 -67.71 -0.40 0.24 15 7 H 0.09 1.75 7.90 -51.93 -0.41 1.34 15 8 N -0.66 -14.90 6.73 -107.99 -0.73 -15.63 15 9 C 0.20 5.29 5.29 -4.98 -0.03 5.27 15 10 C -0.52 -14.98 9.32 -34.44 -0.32 -15.30 15 11 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 13 N -0.90 -27.23 13.29 55.43 0.74 -26.49 15 14 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 15 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 18 H 0.05 0.47 8.14 -51.93 -0.42 0.05 15 19 H 0.05 0.56 8.14 -51.93 -0.42 0.13 15 20 H 0.05 0.57 8.14 -51.93 -0.42 0.14 15 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.06 0.73 7.88 -51.93 -0.41 0.32 15 23 H 0.08 1.21 8.03 -51.93 -0.42 0.80 15 24 H 0.09 1.54 8.14 -51.93 -0.42 1.12 15 25 H 0.33 7.10 8.68 -39.29 -0.34 6.76 15 26 H -0.01 -0.34 8.14 -51.92 -0.42 -0.76 15 27 H 0.03 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 LS Contribution 242.32 15.07 3.65 3.65 Total: -1.00 -29.90 242.32 -7.28 -37.18 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.50 Total: 1.37 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.42 Total: -17.02 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.01 Total: -42.12 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.90 -7.28 -37.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019062409.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.340 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds