Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46953 * 2 1 4 4 H 1.08995 * 115.55347 * 330.67522 * 3 2 1 5 5 C 1.53007 * 117.51712 * 116.36916 * 3 2 1 6 6 C 1.53001 * 117.50024 * 184.99684 * 3 2 1 7 7 H 1.09000 * 117.49166 * 0.02562 * 6 3 2 8 8 N 1.46898 * 117.49693 * 144.99997 * 6 3 2 9 9 C 1.46903 * 110.99849 * 205.00362 * 8 6 3 10 10 C 1.50694 * 109.47066 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 H 1.08994 * 109.46994 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.46847 * 299.99604 * 1 2 3 20 20 H 1.09001 * 109.46818 * 59.99841 * 1 2 3 21 21 H 1.08996 * 109.46847 * 240.00395 * 2 1 3 22 22 H 1.09001 * 109.46818 * 120.00159 * 2 1 3 23 23 H 1.09000 * 117.49238 * 359.97438 * 5 3 2 24 24 H 1.08995 * 117.50204 * 214.97279 * 5 3 2 25 25 H 1.00895 * 110.99776 * 328.95666 * 8 6 3 26 26 H 1.09007 * 109.47052 * 59.99769 * 9 8 6 27 27 H 1.09003 * 109.46808 * 300.00462 * 9 8 6 28 28 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 -0.4816 5 6 2.8439 1.9081 1.2158 6 6 3.5502 1.6580 -0.1182 7 1 4.1803 0.7720 -0.1964 8 7 4.0109 2.8315 -0.8722 9 6 5.3630 2.6173 -1.4050 10 6 5.8009 3.8395 -2.1700 11 1 5.1408 4.6902 -2.2526 12 6 7.0442 3.8714 -2.7655 13 7 7.8480 2.8352 -2.6654 14 14 7.5867 5.3862 -3.7144 15 1 8.9536 5.1697 -4.2529 16 1 6.6452 5.6310 -4.8363 17 1 7.5929 6.5623 -2.8078 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8900 23 1 3.0092 1.1867 2.0160 24 1 2.7211 2.9433 1.5339 25 1 3.3638 3.0636 -1.6107 26 1 5.3588 1.7538 -2.0704 27 1 6.0539 2.4377 -0.5812 28 1 8.7224 2.8575 -3.0847 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019062409.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = -14.585776 kcal Electronic energy + Delta-G solvation = -9367.268191 eV Core-core repulsion = 7610.361546 eV Total energy + Delta-G solvation = -1756.906644 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.20680 -35.88367 -34.06553 -32.15085 -28.25116 -24.67755 -24.00536 -21.96941 -21.32632 -18.55660 -16.78854 -16.56891 -15.81178 -15.40978 -14.96018 -14.36001 -13.85854 -13.41508 -13.22519 -12.90787 -12.70247 -12.58037 -12.14601 -12.07209 -11.87004 -11.52276 -11.22919 -10.70004 -10.63891 -8.99862 -8.24704 -6.37098 1.40469 1.44738 1.52818 2.38796 2.92005 3.08382 3.36259 3.94874 4.02624 4.29482 4.39457 4.51803 4.60570 4.82716 4.90530 4.98895 5.13231 5.17157 5.22697 5.28885 5.30847 5.51743 5.60777 5.99661 6.42026 6.68751 6.84878 7.34057 8.86938 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.101926 B = 0.008274 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 274.644463 B = 3383.425142 C = 3413.268262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.144 4.144 4 H 0.106 0.894 5 C -0.159 4.159 6 C -0.009 4.009 7 H 0.076 0.924 8 N -0.660 5.660 9 C 0.212 3.788 10 C -0.541 4.541 11 H 0.065 0.935 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.978 3.022 15 H -0.281 1.281 16 H -0.265 1.265 17 H -0.268 1.268 18 H 0.065 0.935 19 H 0.060 0.940 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.106 0.894 24 H 0.090 0.910 25 H 0.335 0.665 26 H -0.038 1.038 27 H -0.002 1.002 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 -3.352 3.974 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.164 4.164 4 H 0.124 0.876 5 C -0.197 4.197 6 C -0.119 4.119 7 H 0.094 0.906 8 N -0.290 5.290 9 C 0.084 3.916 10 C -0.579 4.579 11 H 0.083 0.917 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.801 3.199 15 H -0.206 1.206 16 H -0.189 1.189 17 H -0.193 1.193 18 H 0.085 0.915 19 H 0.079 0.921 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.124 0.876 24 H 0.109 0.891 25 H 0.153 0.847 26 H -0.021 1.021 27 H 0.016 0.984 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.091 -3.078 4.475 12.350 hybrid contribution 0.609 -0.080 -1.148 1.302 sum -10.482 -3.159 3.327 11.442 Atomic orbital electron populations 1.21705 0.93931 1.02262 1.02110 1.21152 0.97171 0.92863 1.01896 1.22815 0.92077 0.98990 1.02494 0.87638 1.23310 1.02804 1.02343 0.91273 1.22579 0.94754 0.93534 1.01079 0.90591 1.60323 1.04201 1.34688 1.29807 1.19218 0.85711 0.94575 0.92114 1.21517 1.01668 1.01888 1.32851 0.91664 1.26007 0.96384 0.99991 0.97362 1.70092 1.09685 1.32043 1.45598 0.85318 0.77321 0.78568 0.78675 1.20615 1.18930 1.19282 0.91550 0.92135 0.92764 0.92464 0.91274 0.87623 0.89124 0.84673 1.02065 0.98378 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.87 71.99 0.71 -1.93 15 2 C -0.09 -2.17 6.22 30.60 0.19 -1.98 15 3 C -0.14 -4.15 5.54 -10.79 -0.06 -4.21 15 4 H 0.11 2.96 8.07 -2.39 -0.02 2.94 15 5 C -0.16 -4.87 10.11 30.60 0.31 -4.56 15 6 C -0.01 -0.33 5.98 44.92 0.27 -0.06 15 7 H 0.08 3.08 7.90 -2.39 -0.02 3.06 15 8 N -0.66 -30.35 6.73 -495.56 -3.34 -33.68 15 9 C 0.21 11.92 5.29 85.55 0.45 12.37 15 10 C -0.54 -31.87 9.32 25.60 0.24 -31.63 15 11 H 0.07 3.71 7.81 -2.91 -0.02 3.68 15 12 C 0.00 0.05 5.46 84.66 0.46 0.51 15 13 N -0.93 -57.59 13.29 21.45 0.28 -57.31 15 14 Si 0.98 44.87 29.54 68.60 2.03 46.89 15 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 16 H -0.26 -11.56 7.11 99.48 0.71 -10.86 15 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 18 H 0.07 1.03 8.14 -2.39 -0.02 1.02 15 19 H 0.06 1.05 8.14 -2.39 -0.02 1.03 15 20 H 0.05 1.00 8.14 -2.39 -0.02 0.98 15 21 H 0.06 1.41 8.14 -2.39 -0.02 1.39 15 22 H 0.07 1.51 7.88 -2.39 -0.02 1.49 15 23 H 0.11 2.78 8.03 -2.39 -0.02 2.76 15 24 H 0.09 2.84 8.14 -2.39 -0.02 2.83 15 25 H 0.33 14.52 8.68 -89.70 -0.78 13.74 15 26 H -0.04 -2.30 8.14 -2.38 -0.02 -2.32 15 27 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 15 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 15 Total: -1.00 -64.27 242.32 1.88 -62.39 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.34 Total: 13.18 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 2.57 Total: -31.48 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.05 Total: -90.99 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.27 1.88 -62.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019062409.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.805 kcal (2) G-P(sol) polarization free energy of solvation -64.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds