Wall clock time and date at job start Mon Mar 30 2020 01:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 H 1.09000 * 115.54743 * 29.32893 * 3 2 1 5 5 C 1.53068 * 117.51301 * 243.61156 * 3 2 1 6 6 C 1.52996 * 117.49885 * 175.00011 * 3 2 1 7 7 H 1.08997 * 117.49659 * 0.02562 * 6 3 2 8 8 N 1.46898 * 117.49769 * 215.00229 * 6 3 2 9 9 C 1.46903 * 110.99849 * 155.08941 * 8 6 3 10 10 C 1.50694 * 109.47066 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 H 1.09006 * 109.47282 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.47064 * 299.99934 * 1 2 3 20 20 H 1.08994 * 109.47463 * 59.99891 * 1 2 3 21 21 H 1.09002 * 109.46550 * 240.00182 * 2 1 3 22 22 H 1.08994 * 109.47463 * 120.00109 * 2 1 3 23 23 H 1.09004 * 117.51319 * 145.04323 * 5 3 2 24 24 H 1.09004 * 117.49910 * 0.02562 * 5 3 2 25 25 H 1.00899 * 111.00040 * 31.13522 * 8 6 3 26 26 H 1.09007 * 109.47052 * 59.99769 * 9 8 6 27 27 H 1.09003 * 109.46808 * 300.00462 * 9 8 6 28 28 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8446 1.9080 -1.2161 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7719 0.1957 8 7 4.0108 2.8313 0.8723 9 6 5.3638 2.6179 1.4033 10 6 5.8013 3.8396 2.1695 11 1 5.1406 4.6898 2.2533 12 6 7.0455 3.8724 2.7627 13 7 7.8503 2.8373 2.6603 14 14 7.5880 5.3870 3.7119 15 1 8.2763 6.3277 2.7917 16 1 6.3995 6.0531 4.3026 17 1 8.5197 4.9844 4.7960 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 1.8932 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 2.7223 2.9434 -1.5345 24 1 3.0101 1.1866 -2.0163 25 1 3.3645 3.0626 1.6118 26 1 6.0539 2.4393 0.5786 27 1 5.3611 1.7541 2.0682 28 1 8.7258 2.8605 3.0773 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019062411.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:16 Heat of formation + Delta-G solvation = 5.105291 kcal Electronic energy + Delta-G solvation = -9366.346780 eV Core-core repulsion = 7610.294004 eV Total energy + Delta-G solvation = -1756.052776 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.78570 -33.99655 -32.29265 -30.70133 -26.15650 -23.62471 -21.95047 -20.38305 -20.09776 -16.40020 -15.11882 -14.74692 -14.26439 -14.25343 -13.21667 -12.68385 -12.17214 -12.06791 -11.80902 -11.38191 -11.03335 -10.84274 -10.73397 -10.65938 -10.05862 -9.94558 -9.39567 -9.08956 -8.46314 -7.19391 -6.02812 -4.04940 3.33042 3.38446 3.42437 4.26784 4.42799 4.83132 5.18164 5.26811 5.33130 5.40299 5.52261 5.66719 5.93545 5.98999 6.03881 6.20574 6.23559 6.26526 6.51518 6.65383 7.28567 7.42669 7.80035 8.14147 8.39971 8.61837 9.04242 9.59869 11.08389 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.101957 B = 0.008273 C = 0.008200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 274.559517 B = 3383.550051 C = 3413.615043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.174 4.174 4 H 0.101 0.899 5 C -0.173 4.173 6 C 0.034 3.966 7 H 0.090 0.910 8 N -0.661 5.661 9 C 0.195 3.805 10 C -0.516 4.516 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.901 3.099 15 H -0.280 1.280 16 H -0.273 1.273 17 H -0.287 1.287 18 H 0.049 0.951 19 H 0.053 0.947 20 H 0.053 0.947 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.331 0.669 26 H 0.029 0.971 27 H -0.012 1.012 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.302 -3.932 -3.931 11.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.193 4.193 4 H 0.119 0.881 5 C -0.212 4.212 6 C -0.078 4.078 7 H 0.108 0.892 8 N -0.290 5.290 9 C 0.068 3.932 10 C -0.554 4.554 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.728 3.272 15 H -0.206 1.206 16 H -0.198 1.198 17 H -0.213 1.213 18 H 0.068 0.932 19 H 0.072 0.928 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.111 0.889 24 H 0.103 0.897 25 H 0.149 0.851 26 H 0.047 0.953 27 H 0.006 0.994 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.875 -3.649 -4.411 11.415 hybrid contribution 0.281 0.162 1.173 1.217 sum -9.594 -3.487 -3.238 10.710 Atomic orbital electron populations 1.21733 0.95917 1.01016 1.01737 1.21099 0.95507 0.94804 1.01609 1.22738 0.95074 0.97223 1.04310 0.88126 1.23257 1.04519 1.01762 0.91614 1.22533 0.91900 0.94771 0.98550 0.89230 1.60433 1.06037 1.32559 1.30014 1.19611 0.83652 0.95955 0.93951 1.21189 1.00888 1.01325 1.32031 0.91955 1.24995 0.96528 0.96493 0.96561 1.69968 1.09063 1.29736 1.44961 0.86460 0.78469 0.82797 0.79441 1.20589 1.19835 1.21277 0.93155 0.92824 0.92801 0.92170 0.92011 0.88873 0.89720 0.85087 0.95270 0.99401 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.87 37.16 0.37 -1.21 15 2 C -0.09 -1.18 6.22 -26.73 -0.17 -1.35 15 3 C -0.17 -2.64 5.54 -90.59 -0.50 -3.14 15 4 H 0.10 1.52 8.07 -51.93 -0.42 1.10 15 5 C -0.17 -2.78 10.11 -26.69 -0.27 -3.05 15 6 C 0.03 0.64 5.97 -67.71 -0.40 0.24 15 7 H 0.09 1.75 7.90 -51.93 -0.41 1.34 15 8 N -0.66 -14.90 6.73 -107.99 -0.73 -15.63 15 9 C 0.19 5.28 5.29 -4.98 -0.03 5.26 15 10 C -0.52 -14.96 9.32 -34.44 -0.32 -15.28 15 11 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 13 N -0.90 -27.22 13.29 55.43 0.74 -26.48 15 14 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 15 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 18 H 0.05 0.47 8.14 -51.93 -0.42 0.05 15 19 H 0.05 0.57 8.14 -51.93 -0.42 0.14 15 20 H 0.05 0.56 8.14 -51.93 -0.42 0.13 15 21 H 0.06 0.73 7.88 -51.93 -0.41 0.32 15 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.09 1.54 8.14 -51.93 -0.42 1.12 15 24 H 0.08 1.21 8.03 -51.93 -0.42 0.80 15 25 H 0.33 7.10 8.68 -39.29 -0.34 6.76 15 26 H 0.03 0.85 8.14 -51.92 -0.42 0.43 15 27 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 15 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 LS Contribution 242.33 15.07 3.65 3.65 Total: -1.00 -29.92 242.33 -7.28 -37.20 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.50 Total: 1.34 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.42 Total: -17.01 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.01 Total: -42.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.92 -7.28 -37.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019062411.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.308 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds