Wall clock time and date at job start Mon Mar 30 2020 01:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1 5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1 6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 10 14 14 C 1.53000 * 117.50165 * 243.62147 * 13 12 11 15 15 C 1.52994 * 59.99907 * 252.50793 * 14 13 12 16 16 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 17 17 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 18 18 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 19 19 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 20 20 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 21 21 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 22 22 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 23 23 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 24 24 H 1.09003 * 115.54795 * 29.32512 * 13 12 11 25 25 H 1.09001 * 117.49810 * 359.97438 * 14 13 12 26 26 H 1.08995 * 117.50134 * 145.01745 * 14 13 12 27 27 H 1.09004 * 117.49933 * 252.50827 * 15 14 13 28 28 H 1.09002 * 117.49788 * 107.49222 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0006 14 6 1.7795 -8.2972 1.2155 15 6 2.4184 -8.6891 -0.1183 16 1 -0.4850 0.8400 0.0004 17 1 0.6241 -2.5567 -0.8903 18 1 0.6247 -2.5571 0.8897 19 1 2.8720 -3.6043 0.8894 20 1 2.8720 -3.6043 -0.8906 21 1 0.8742 -4.9845 0.7801 22 1 3.0640 -6.0348 -0.8901 23 1 3.0628 -6.0349 0.8899 24 1 0.6589 -7.3325 -0.4826 25 1 2.4446 -7.9718 2.0154 26 1 0.8977 -8.8533 1.5338 27 1 1.9569 -9.5031 -0.6775 28 1 3.5036 -8.6213 -0.1957 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020037519.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:42 Heat of formation + Delta-G solvation = 6.751317 kcal Electronic energy + Delta-G solvation = -9254.173119 eV Core-core repulsion = 7498.191720 eV Total energy + Delta-G solvation = -1755.981399 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.73387 -35.11457 -32.75678 -29.56200 -25.77801 -23.24950 -22.35237 -20.79584 -19.99192 -16.35889 -15.94375 -14.73011 -14.48921 -14.28388 -13.49375 -12.73183 -12.54173 -12.09833 -11.54009 -11.17140 -11.07046 -10.88365 -10.57934 -10.30181 -10.07600 -9.80196 -9.33184 -9.11949 -8.33396 -7.78563 -5.97804 -4.00383 3.33586 3.39389 3.42717 3.83261 4.43814 4.60873 4.92977 4.98246 5.30912 5.38057 5.55869 5.60669 5.81620 5.86812 6.00035 6.10468 6.35869 6.36824 6.47533 7.00532 7.52380 7.75984 7.85754 8.00029 8.11452 8.45941 9.06894 9.63224 11.13705 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.138913 B = 0.007331 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 201.516318 B = 3818.495790 C = 3924.343042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.065 3.935 11 N -0.691 5.691 12 C 0.088 3.912 13 C -0.145 4.145 14 C -0.187 4.187 15 C -0.181 4.181 16 H 0.260 0.740 17 H 0.026 0.974 18 H 0.014 0.986 19 H 0.015 0.985 20 H 0.058 0.942 21 H 0.337 0.663 22 H 0.070 0.930 23 H 0.023 0.977 24 H 0.112 0.888 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -12.287 1.205 12.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.322 5.322 12 C -0.042 4.042 13 C -0.164 4.164 14 C -0.224 4.224 15 C -0.219 4.219 16 H 0.070 0.930 17 H 0.044 0.956 18 H 0.032 0.968 19 H 0.033 0.967 20 H 0.076 0.924 21 H 0.154 0.846 22 H 0.088 0.912 23 H 0.041 0.959 24 H 0.130 0.870 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.548 -12.164 0.522 12.681 hybrid contribution 0.773 0.938 0.930 1.531 sum 4.322 -11.226 1.452 12.116 Atomic orbital electron populations 1.69969 1.06039 1.26582 1.50681 1.25008 0.94850 0.99224 0.95318 0.86579 0.79779 0.83427 0.78115 1.20619 1.21217 1.19938 1.21188 0.92993 0.91039 1.50843 0.92758 1.19077 0.94044 0.90429 0.97750 1.22164 0.97014 0.88538 0.98599 1.60587 1.19810 1.02030 1.49732 1.21495 0.93845 0.88953 0.99874 1.22410 1.01431 0.90765 1.01778 1.23045 1.03054 1.04453 0.91809 1.22911 0.99613 0.98725 1.00652 0.92989 0.95610 0.96783 0.96720 0.92370 0.84604 0.91167 0.95892 0.86994 0.89081 0.89040 0.88975 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.59 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 15 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 15 9 C 0.02 0.66 5.23 -27.89 -0.15 0.51 15 10 C 0.06 1.43 5.62 -3.82 -0.02 1.40 15 11 N -0.69 -13.00 6.50 -113.78 -0.74 -13.74 15 12 C 0.09 1.36 5.97 -3.83 -0.02 1.33 15 13 C -0.15 -1.90 5.95 -90.62 -0.54 -2.44 15 14 C -0.19 -2.09 10.18 -26.73 -0.27 -2.36 15 15 C -0.18 -1.97 10.25 -26.74 -0.27 -2.24 15 16 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 17 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 18 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 15 19 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 15 20 H 0.06 1.28 8.14 -51.93 -0.42 0.85 15 21 H 0.34 6.12 8.73 -39.29 -0.34 5.77 15 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.02 0.35 7.87 -51.93 -0.41 -0.06 15 24 H 0.11 1.53 8.14 -51.93 -0.42 1.10 15 25 H 0.09 1.01 8.03 -51.93 -0.42 0.59 15 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15 LS Contribution 242.38 15.07 3.65 3.65 Total: -1.00 -30.11 242.38 -7.57 -37.68 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.51 Total: -0.26 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -1.69 Total: -17.67 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.00 Total: -40.33 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.11 -7.57 -37.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020037519.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.433 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds