Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47277 * 2 1 4 4 C 1.50700 * 109.47084 * 240.00653 * 2 1 3 5 5 H 1.07999 * 119.99849 * 335.25467 * 4 2 1 6 6 C 1.37875 * 120.00281 * 155.26320 * 4 2 1 7 7 N 1.31512 * 119.99799 * 355.15264 * 6 4 2 8 8 Si 1.86801 * 120.00185 * 175.14807 * 6 4 2 9 9 H 1.48501 * 109.47094 * 90.00071 * 8 6 4 10 10 H 1.48502 * 109.47003 * 209.99922 * 8 6 4 11 11 H 1.48499 * 109.47026 * 330.00143 * 8 6 4 12 12 N 1.46891 * 109.47153 * 120.00352 * 2 1 3 13 13 C 1.46903 * 110.99996 * 58.95427 * 12 2 1 14 14 C 1.46904 * 110.99976 * 294.99864 * 12 2 1 15 15 C 1.52995 * 117.49819 * 248.74696 * 14 12 2 16 16 C 1.53001 * 117.49800 * 180.08876 * 14 12 2 17 17 H 1.09009 * 109.47133 * 54.94516 * 1 2 3 18 18 H 1.08999 * 109.47092 * 174.94443 * 1 2 3 19 19 H 1.08994 * 109.47355 * 294.94705 * 1 2 3 20 20 H 0.97001 * 120.00122 * 5.11939 * 7 6 4 21 21 H 1.08998 * 109.46948 * 60.00235 * 13 12 2 22 22 H 1.09003 * 109.47064 * 179.97438 * 13 12 2 23 23 H 1.09001 * 109.46940 * 299.99875 * 13 12 2 24 24 H 1.08993 * 115.54761 * 34.42080 * 14 12 2 25 25 H 1.09000 * 117.50463 * 359.97438 * 15 14 12 26 26 H 1.09003 * 117.49870 * 145.02276 * 15 14 12 27 27 H 1.09003 * 117.49859 * 214.98477 * 16 14 12 28 28 H 1.09001 * 117.50138 * 359.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 1.4114 -1.4454 -1.7210 6 6 3.2845 -0.4218 -1.7302 7 7 4.0021 0.5395 -1.1912 8 14 3.9619 -1.3965 -3.1726 9 1 3.5746 -0.7334 -4.4437 10 1 5.4427 -1.4571 -3.0772 11 1 3.4071 -2.7736 -3.1436 12 7 2.0196 -0.6925 1.1993 13 6 1.5283 -2.0762 1.2458 14 6 1.6487 0.0391 2.4180 15 6 2.7744 0.7024 3.2140 16 6 2.0882 -0.5528 3.7587 17 1 -0.3634 0.5903 -0.8413 18 1 -0.3633 -1.0237 -0.0906 19 1 -0.3634 0.4334 0.9317 20 1 3.6832 0.9957 -0.3968 21 1 1.8762 -2.6150 0.3645 22 1 1.9060 -2.5659 2.1433 23 1 0.4384 -2.0743 1.2637 24 1 0.6867 0.5505 2.3848 25 1 3.7903 0.5956 2.8337 26 1 2.5529 1.6501 3.7048 27 1 1.4155 -0.4305 4.6076 28 1 2.6522 -1.4853 3.7365 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021404959.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = 25.186142 kcal Electronic energy + Delta-G solvation = -10143.710474 eV Core-core repulsion = 8388.528470 eV Total energy + Delta-G solvation = -1755.182005 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.88636 -34.58917 -31.88498 -28.79866 -25.03676 -24.59277 -21.74908 -21.21343 -18.89466 -16.60284 -15.69854 -14.37052 -13.76790 -13.58365 -13.38721 -12.32795 -12.22283 -11.76130 -11.27695 -10.91805 -10.74396 -10.73285 -10.34205 -10.08365 -9.88265 -9.66075 -9.47767 -8.56106 -8.22266 -7.01100 -6.26795 -4.01116 3.46425 3.51133 3.66512 4.41930 4.57646 4.86323 5.49421 5.57893 5.58631 5.95742 6.03133 6.17111 6.28956 6.35468 6.41155 6.44328 6.50123 6.65376 6.75120 6.93510 7.07524 7.35172 7.96477 8.36659 8.56157 8.62415 8.97909 9.77393 11.12665 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.057931 B = 0.015626 C = 0.014613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.219826 B = 1791.426208 C = 1915.616108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.191 3.809 3 H 0.045 0.955 4 C -0.589 4.589 5 H 0.046 0.954 6 C 0.033 3.967 7 N -0.900 5.900 8 Si 1.068 2.932 9 H -0.289 1.289 10 H -0.285 1.285 11 H -0.290 1.290 12 N -0.502 5.502 13 C 0.043 3.957 14 C 0.008 3.992 15 C -0.169 4.169 16 C -0.187 4.187 17 H 0.046 0.954 18 H 0.043 0.957 19 H 0.025 0.975 20 H 0.277 0.723 21 H 0.073 0.927 22 H 0.040 0.960 23 H 0.008 0.992 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -2.003 5.371 6.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.086 3.914 3 H 0.063 0.937 4 C -0.628 4.628 5 H 0.064 0.936 6 C -0.174 4.174 7 N -0.534 5.534 8 Si 0.897 3.103 9 H -0.216 1.216 10 H -0.211 1.211 11 H -0.216 1.216 12 N -0.226 5.226 13 C -0.105 4.105 14 C -0.101 4.101 15 C -0.207 4.207 16 C -0.224 4.224 17 H 0.065 0.935 18 H 0.062 0.938 19 H 0.044 0.956 20 H 0.088 0.912 21 H 0.092 0.908 22 H 0.059 0.941 23 H 0.026 0.974 24 H 0.094 0.906 25 H 0.116 0.884 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.947 -2.119 4.304 5.177 hybrid contribution -2.249 0.105 1.187 2.545 sum -4.196 -2.013 5.491 7.198 Atomic orbital electron populations 1.22376 1.01305 1.00163 0.98741 1.19484 0.88276 0.95677 0.87969 0.93659 1.21775 1.03555 1.26855 1.10657 0.93553 1.25744 0.93814 0.96054 1.01805 1.70665 1.41004 1.20113 1.21661 0.83577 0.76224 0.75404 0.75068 1.21623 1.21069 1.21578 1.62780 1.58601 1.01209 1.00046 1.22055 0.96055 0.91416 1.00944 1.22604 0.96054 1.01733 0.89727 1.22971 0.99152 0.95120 1.03440 1.22955 1.04447 0.98288 0.96733 0.93454 0.93839 0.95576 0.91168 0.90829 0.94126 0.97375 0.90632 0.88400 0.89911 0.89958 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 8.47 37.16 0.31 -3.38 15 2 C 0.19 4.86 2.07 -68.87 -0.14 4.71 15 3 H 0.05 1.27 6.66 -51.93 -0.35 0.92 15 4 C -0.59 -16.49 7.16 -34.44 -0.25 -16.73 15 5 H 0.05 1.30 7.81 -52.49 -0.41 0.89 15 6 C 0.03 0.96 5.45 -17.82 -0.10 0.86 15 7 N -0.90 -27.32 13.63 55.43 0.76 -26.57 15 8 Si 1.07 25.39 29.91 -169.99 -5.08 20.31 15 9 H -0.29 -6.63 7.11 56.52 0.40 -6.22 15 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 12 N -0.50 -11.78 4.89 -228.30 -1.12 -12.90 15 13 C 0.04 0.93 8.76 60.07 0.53 1.45 15 14 C 0.01 0.16 5.03 -67.71 -0.34 -0.18 15 15 C -0.17 -3.07 10.46 -26.70 -0.28 -3.35 15 16 C -0.19 -3.14 9.73 -26.69 -0.26 -3.40 15 17 H 0.05 1.02 8.14 -51.92 -0.42 0.60 15 18 H 0.04 0.94 6.67 -51.93 -0.35 0.59 15 19 H 0.03 0.52 6.19 -51.93 -0.32 0.20 15 20 H 0.28 8.46 6.66 -40.82 -0.27 8.19 15 21 H 0.07 1.70 7.12 -51.93 -0.37 1.33 15 22 H 0.04 0.77 6.76 -51.93 -0.35 0.42 15 23 H 0.01 0.16 6.40 -51.93 -0.33 -0.17 15 24 H 0.08 1.49 6.22 -51.93 -0.32 1.17 15 25 H 0.10 1.95 8.14 -51.93 -0.42 1.53 15 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 28 H 0.09 1.58 7.26 -51.93 -0.38 1.20 15 LS Contribution 227.20 15.07 3.42 3.42 Total: -1.00 -29.55 227.20 -6.48 -36.03 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.94 Total: -0.29 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -0.52 Total: -20.01 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.36 Total: -39.47 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -29.55 -6.48 -36.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021404959.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.213 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds