Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47153 * 2 1 4 4 C 1.46899 * 111.00024 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46938 * 34.99869 * 4 3 2 6 6 C 1.50701 * 109.47347 * 155.00085 * 4 3 2 7 7 H 1.07997 * 120.00147 * 54.92276 * 6 4 3 8 8 C 1.37877 * 119.99916 * 234.92603 * 6 4 3 9 9 N 1.31517 * 120.00110 * 5.18046 * 8 6 4 10 10 Si 1.86796 * 120.00270 * 185.17952 * 8 6 4 11 11 H 1.48505 * 109.46883 * 89.99620 * 10 8 6 12 12 H 1.48496 * 109.47640 * 210.00195 * 10 8 6 13 13 H 1.48502 * 109.46966 * 330.00153 * 10 8 6 14 14 C 1.52997 * 109.46891 * 275.00149 * 4 3 2 15 15 C 1.53006 * 117.49639 * 243.39710 * 14 4 3 16 16 C 1.53007 * 117.49797 * 174.73801 * 14 4 3 17 17 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.47241 * 300.00374 * 1 2 3 19 19 H 1.09003 * 109.47347 * 60.00052 * 1 2 3 20 20 H 1.08999 * 109.46874 * 119.99863 * 2 1 3 21 21 H 1.08997 * 109.46768 * 239.99709 * 2 1 3 22 22 H 1.00893 * 110.99950 * 56.04276 * 3 2 1 23 23 H 0.96996 * 120.00310 * 179.97438 * 9 8 6 24 24 H 1.08993 * 115.55354 * 29.06932 * 14 4 3 25 25 H 1.09000 * 117.50076 * 359.97438 * 15 14 4 26 26 H 1.09001 * 117.49840 * 145.02182 * 15 14 4 27 27 H 1.08996 * 117.49812 * 214.97233 * 16 14 4 28 28 H 1.09000 * 117.49722 * 0.02562 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8735 0.5924 -0.5903 6 6 3.9557 2.7249 -0.6011 7 1 3.6041 3.6631 -0.1979 8 6 4.8325 2.7172 -1.6651 9 7 5.1814 1.5777 -2.2215 10 14 5.5250 4.3252 -2.3165 11 1 6.7856 4.6473 -1.6007 12 1 5.8007 4.1929 -3.7696 13 1 4.5390 5.4137 -2.0968 14 6 4.0019 1.3118 1.4361 15 6 4.7791 2.5014 2.0035 16 6 5.5149 1.2093 1.6394 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.6442 1.9012 0.7813 23 1 5.7979 1.5723 -2.9703 24 1 3.3632 0.7549 2.1216 25 1 4.9248 3.3638 1.3530 26 1 4.6519 2.7268 3.0623 27 1 5.8714 0.5854 2.4589 28 1 6.1443 1.2224 0.7496 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023804148.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = 16.399880 kcal Electronic energy + Delta-G solvation = -9948.586722 eV Core-core repulsion = 8193.023716 eV Total energy + Delta-G solvation = -1755.563006 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.22030 -34.33201 -32.35609 -29.49976 -25.81145 -22.92676 -21.49049 -21.07784 -19.13557 -16.24559 -14.81819 -14.68040 -14.41577 -13.54891 -13.05202 -12.92141 -11.73550 -11.64936 -11.16429 -10.91982 -10.78722 -10.55793 -10.46316 -10.26300 -9.70436 -9.46165 -9.17985 -8.57376 -8.43582 -7.04952 -5.96397 -3.97794 3.33303 3.40468 3.44145 4.45312 4.93243 5.19115 5.58391 5.73575 5.86747 5.96265 6.11988 6.17007 6.25522 6.39559 6.56744 6.57142 6.70407 6.73792 7.05980 7.27689 7.36999 7.49050 7.91096 8.24998 8.72466 8.75861 9.11974 9.63434 11.11398 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.017506 C = 0.014061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.132750 B = 1599.089403 C = 1990.821104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.677 5.677 4 C 0.220 3.780 5 H 0.078 0.922 6 C -0.482 4.482 7 H 0.055 0.945 8 C 0.066 3.934 9 N -0.894 5.894 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.171 4.171 15 C -0.173 4.173 16 C -0.177 4.177 17 H 0.046 0.954 18 H 0.044 0.956 19 H 0.059 0.941 20 H 0.010 0.990 21 H 0.064 0.936 22 H 0.316 0.684 23 H 0.260 0.740 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 -1.110 4.942 5.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.306 5.306 4 C 0.112 3.888 5 H 0.096 0.904 6 C -0.521 4.521 7 H 0.073 0.927 8 C -0.136 4.136 9 N -0.533 5.533 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.192 4.192 15 C -0.210 4.210 16 C -0.214 4.214 17 H 0.065 0.935 18 H 0.063 0.937 19 H 0.078 0.922 20 H 0.028 0.972 21 H 0.083 0.917 22 H 0.132 0.868 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.128 0.872 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.886 -1.127 4.086 5.127 hybrid contribution 0.634 0.478 0.628 1.012 sum -2.251 -0.650 4.713 5.264 Atomic orbital electron populations 1.21776 0.96722 1.00228 1.01643 1.21898 0.93963 0.92662 0.99280 1.61235 1.11593 1.09953 1.47796 1.19157 0.81955 0.99608 0.88033 0.90362 1.20858 1.24686 0.91955 1.14617 0.92725 1.24957 0.96699 0.96056 0.95914 1.69892 1.34656 1.25003 1.23744 0.86630 0.79344 0.84168 0.78062 1.20720 1.21331 1.19833 1.23455 0.93327 1.00957 1.01414 1.22936 1.05561 0.94029 0.98473 1.22665 0.95935 1.00743 1.02082 0.93506 0.93658 0.92236 0.97184 0.91736 0.86771 0.92981 0.91579 0.87189 0.91920 0.91525 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.17 37.16 0.38 -1.93 15 2 C 0.05 1.01 6.20 -3.82 -0.02 0.99 15 3 N -0.68 -15.26 6.23 -107.96 -0.67 -15.93 15 4 C 0.22 5.51 2.67 -68.87 -0.18 5.33 15 5 H 0.08 2.23 6.58 -51.93 -0.34 1.88 15 6 C -0.48 -13.09 6.48 -34.44 -0.22 -13.32 15 7 H 0.05 1.49 7.42 -52.49 -0.39 1.10 15 8 C 0.07 1.82 5.45 -17.82 -0.10 1.72 15 9 N -0.89 -25.91 12.62 55.43 0.70 -25.21 15 10 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 15 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 14 C -0.17 -3.78 5.56 -90.61 -0.50 -4.29 15 15 C -0.17 -3.62 9.68 -26.69 -0.26 -3.88 15 16 C -0.18 -3.77 10.12 -26.69 -0.27 -4.04 15 17 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 18 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 20 H 0.01 0.19 7.69 -51.93 -0.40 -0.21 15 21 H 0.06 1.35 8.05 -51.93 -0.42 0.93 15 22 H 0.32 6.65 8.48 -39.30 -0.33 6.32 15 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 24 H 0.07 1.37 7.79 -51.93 -0.40 0.96 15 25 H 0.11 2.50 6.21 -51.93 -0.32 2.18 15 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.10 2.33 8.14 -51.93 -0.42 1.90 15 LS Contribution 235.43 15.07 3.55 3.55 Total: -1.00 -28.13 235.43 -6.91 -35.04 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.28 Total: 5.57 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.18 Total: -19.42 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.03 Total: -41.15 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.13 -6.91 -35.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023804148.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.440 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds