Wall clock time and date at job start Mon Mar 30 2020 02:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47153 * 2 1 4 4 C 1.46899 * 111.00024 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46938 * 34.99869 * 4 3 2 6 6 C 1.50701 * 109.47347 * 155.00085 * 4 3 2 7 7 H 1.07997 * 120.00147 * 54.92276 * 6 4 3 8 8 C 1.37877 * 119.99916 * 234.92603 * 6 4 3 9 9 N 1.31517 * 120.00110 * 5.18046 * 8 6 4 10 10 Si 1.86796 * 120.00270 * 185.17952 * 8 6 4 11 11 H 1.48505 * 109.46883 * 89.99620 * 10 8 6 12 12 H 1.48496 * 109.47640 * 210.00195 * 10 8 6 13 13 H 1.48502 * 109.46966 * 330.00153 * 10 8 6 14 14 C 1.52997 * 109.46891 * 275.00149 * 4 3 2 15 15 C 1.53006 * 117.49639 * 243.39710 * 14 4 3 16 16 C 1.53007 * 117.49797 * 174.73801 * 14 4 3 17 17 H 1.08999 * 109.47198 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.47241 * 300.00374 * 1 2 3 19 19 H 1.09003 * 109.47347 * 60.00052 * 1 2 3 20 20 H 1.08999 * 109.46874 * 119.99863 * 2 1 3 21 21 H 1.08997 * 109.46768 * 239.99709 * 2 1 3 22 22 H 1.00893 * 110.99950 * 56.04276 * 3 2 1 23 23 H 0.96996 * 120.00310 * 179.97438 * 9 8 6 24 24 H 1.08993 * 115.55354 * 29.06932 * 14 4 3 25 25 H 1.09000 * 117.50076 * 359.97438 * 15 14 4 26 26 H 1.09001 * 117.49840 * 145.02182 * 15 14 4 27 27 H 1.08996 * 117.49812 * 214.97233 * 16 14 4 28 28 H 1.09000 * 117.49722 * 0.02562 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 1 3.8735 0.5924 -0.5903 6 6 3.9557 2.7249 -0.6011 7 1 3.6041 3.6631 -0.1979 8 6 4.8325 2.7172 -1.6651 9 7 5.1814 1.5777 -2.2215 10 14 5.5250 4.3252 -2.3165 11 1 6.7856 4.6473 -1.6007 12 1 5.8007 4.1929 -3.7696 13 1 4.5390 5.4137 -2.0968 14 6 4.0019 1.3118 1.4361 15 6 4.7791 2.5014 2.0035 16 6 5.5149 1.2093 1.6394 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3634 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 1.8933 -0.5138 0.8900 21 1 1.8933 -0.5139 -0.8900 22 1 1.6442 1.9012 0.7813 23 1 5.7979 1.5723 -2.9703 24 1 3.3632 0.7549 2.1216 25 1 4.9248 3.3638 1.3530 26 1 4.6519 2.7268 3.0623 27 1 5.8714 0.5854 2.4589 28 1 6.1443 1.2224 0.7496 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023804148.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:24 Heat of formation + Delta-G solvation = -1.725369 kcal Electronic energy + Delta-G solvation = -9949.372691 eV Core-core repulsion = 8193.023716 eV Total energy + Delta-G solvation = -1756.348975 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 169.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.01406 -35.98684 -34.41402 -31.15281 -27.75785 -24.79119 -23.14939 -22.69564 -21.00371 -18.29526 -16.62299 -16.56689 -16.09838 -15.20788 -14.84539 -14.53881 -13.61684 -13.41979 -12.82396 -12.62201 -12.45608 -12.37673 -12.05375 -11.95770 -11.66565 -11.31527 -10.93588 -10.61075 -10.38802 -8.83050 -8.05982 -6.13791 1.41883 1.43212 1.53003 2.44771 3.13511 3.24445 3.88061 4.20607 4.32141 4.45010 4.47621 4.54689 4.71283 4.86663 4.93005 5.03987 5.21908 5.26848 5.38534 5.45812 5.51955 5.65309 5.75945 6.26511 6.81594 6.95922 7.08204 7.50318 9.00732 Molecular weight = 169.12amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.017506 C = 0.014061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.132750 B = 1599.089403 C = 1990.821104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.052 3.948 3 N -0.690 5.690 4 C 0.221 3.779 5 H 0.036 0.964 6 C -0.487 4.487 7 H 0.050 0.950 8 C 0.014 3.986 9 N -0.930 5.930 10 Si 0.950 3.050 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.268 1.268 14 C -0.179 4.179 15 C -0.160 4.160 16 C -0.176 4.176 17 H 0.072 0.928 18 H 0.060 0.940 19 H 0.051 0.949 20 H 0.019 0.981 21 H 0.040 0.960 22 H 0.327 0.673 23 H 0.259 0.741 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 -0.644 6.362 7.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.077 4.077 3 N -0.321 5.321 4 C 0.113 3.887 5 H 0.055 0.945 6 C -0.526 4.526 7 H 0.068 0.932 8 C -0.184 4.184 9 N -0.570 5.570 10 Si 0.776 3.224 11 H -0.199 1.199 12 H -0.214 1.214 13 H -0.193 1.193 14 C -0.200 4.200 15 C -0.197 4.197 16 C -0.213 4.213 17 H 0.091 0.909 18 H 0.079 0.921 19 H 0.070 0.930 20 H 0.037 0.963 21 H 0.058 0.942 22 H 0.144 0.856 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.549 -0.652 5.520 6.595 hybrid contribution 0.794 0.293 0.215 0.873 sum -2.756 -0.359 5.734 6.372 Atomic orbital electron populations 1.21688 0.93500 1.02085 1.02026 1.21910 0.96559 0.90747 0.98509 1.61015 1.10244 1.12123 1.48668 1.18907 0.83433 0.97035 0.89288 0.94541 1.21116 1.24377 0.92628 1.14463 0.93153 1.25682 0.97327 0.98932 0.96466 1.70034 1.35639 1.26923 1.24413 0.85681 0.78880 0.80585 0.77264 1.19944 1.21423 1.19267 1.23292 0.94030 1.02638 1.00020 1.22916 1.04085 0.92685 0.99983 1.22637 0.94937 1.01932 1.01837 0.90941 0.92070 0.93010 0.96297 0.94160 0.85591 0.93214 0.89495 0.89377 0.88301 0.88255 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 10.17 71.98 0.73 -3.24 15 2 C 0.05 2.00 6.20 86.30 0.54 2.53 15 3 N -0.69 -30.78 6.23 -495.47 -3.09 -33.87 15 4 C 0.22 11.18 2.67 44.17 0.12 11.30 15 5 H 0.04 2.14 6.58 -2.39 -0.02 2.13 15 6 C -0.49 -26.64 6.48 25.60 0.17 -26.47 15 7 H 0.05 2.74 7.42 -2.91 -0.02 2.72 15 8 C 0.01 0.79 5.45 84.65 0.46 1.26 15 9 N -0.93 -55.38 12.62 21.45 0.27 -55.10 15 10 Si 0.95 44.39 29.54 68.60 2.03 46.41 15 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 12 H -0.29 -13.41 7.11 99.48 0.71 -12.71 15 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 14 C -0.18 -7.69 5.56 -10.79 -0.06 -7.75 15 15 C -0.16 -6.35 9.68 30.62 0.30 -6.06 15 16 C -0.18 -7.28 10.12 30.62 0.31 -6.97 15 17 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 18 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 19 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 20 H 0.02 0.69 7.69 -2.39 -0.02 0.67 15 21 H 0.04 1.70 8.05 -2.39 -0.02 1.69 15 22 H 0.33 13.26 8.48 -89.70 -0.76 12.50 15 23 H 0.26 14.74 8.31 -92.71 -0.77 13.97 15 24 H 0.09 3.36 7.79 -2.39 -0.02 3.35 15 25 H 0.09 3.91 6.21 -2.39 -0.01 3.89 15 26 H 0.10 3.23 8.14 -2.39 -0.02 3.21 15 27 H 0.10 3.44 8.14 -2.39 -0.02 3.42 15 28 H 0.06 3.07 8.14 -2.39 -0.02 3.05 15 Total: -1.00 -60.44 235.43 2.13 -58.31 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.36 Total: 19.66 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 2.56 Total: -35.40 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -2.82 Total: -88.98 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -60.44 2.13 -58.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023804148.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.583 kcal (2) G-P(sol) polarization free energy of solvation -60.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds